RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 NPFFO15130 113 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 GGCTO75223 188 aaKnown RBP1.99□□□□□ -2.09
VPS41-210ENST00000462429 SLC25A5P05141 298 aaKnown RBP1.99□□□□□ -2.09
VPS41-210ENST00000462429 CRYGDP07320 174 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 OR10J4P0C629 311 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 SMIM6P0DI80 62 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 LYNX1P0DP58 116 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 RPL35P42766 123 aaKnown RBP1.99□□□□□ -2.09
VPS41-210ENST00000462429 RANP62826 216 aaKnown RBP1.99□□□□□ -2.09
VPS41-210ENST00000462429 FABP9Q0Z7S8 132 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 Q56UQ5 140 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 SAPCD1Q5SSQ6 148 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 IBA57Q5T440 356 aaKnown RBP1.99□□□□□ -2.09
VPS41-210ENST00000462429 Q6AWC8 147 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 HCP5Q6MZN7 132 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 SCGB1D4Q6XE38 83 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 ATP5L2Q7Z4Y8 100 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 NIT1Q86X76 327 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 BAGE2Q86Y30 109 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 FAM223AQ8IWN6 122 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 Q8NAQ8 132 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 OR4B1Q8NGF8 309 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 SGMS2Q8NHU3 365 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 USMG5Q96IX5 58 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 GNB1LQ9BYB4 327 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 BPESC1Q9GZL8 116 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 MS4A6AQ9H2W1 248 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 IL36BQ9NZH7 164 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 NAT8BQ9UHF3 227 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 RABAC1Q9UI14 185 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 EPDR1Q9UM22 224 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 ZFP30Q9Y2G7 519 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 SOX21Q9Y651 276 aaPredicted RBP1.99□□□□□ -2.09
VPS41-210ENST00000462429 CFAP54Q96N23 3096 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 ROS1P08922 2347 aa1.99□□□□□ -2.09
VPS41-210ENST00000462429 PKDREJQ9NTG1 2253 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 CELSR3Q9NYQ7 3312 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 SPTBN2O15020 2390 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 TPRP12270 2363 aaKnown RBP1.98□□□□□ -2.09
VPS41-210ENST00000462429 A0A1B0GU33 70 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 I3L2K1 104 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 IGHV1-69P01742 117 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 TRGC2P03986 189 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 TYMSP04818 313 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 REG1AP05451 166 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 MSMBP08118 114 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 IGLC1P0CG04 106 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 MGST1P10620 155 aaKnown RBP1.98□□□□□ -2.09
VPS41-210ENST00000462429 NPPCP23582 126 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 CRYBB3P26998 211 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 ATP5G3P48201 142 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 NDUFA6P56556 154 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 RPS20P60866 119 aaKnown RBP1.98□□□□□ -2.09
VPS41-210ENST00000462429 DIAPH2-AS1Q14236 149 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 C1orf194Q5T5A4 169 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 UNQ5815/PRO19632Q6UWF5 114 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 MIR17HGQ75NE6 70 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 OR8I2Q8N0Y5 310 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 OR10D4PQ8NGN7 298 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 C10orf105Q8TEF2 133 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 SLC50A1Q9BRV3 221 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 OTORQ9NRC9 128 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 TP53TG1Q9Y2A0 90 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 ANKHD1Q8IWZ3 2542 aaKnown RBP1.98□□□□□ -2.09
VPS41-210ENST00000462429 ABCA4P78363 2273 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 PRRC2CQ9Y520 2896 aaKnown RBP1.98□□□□□ -2.09
VPS41-210ENST00000462429 DMDP11532 3685 aa1.98□□□□□ -2.09
VPS41-210ENST00000462429 COL6A6A6NMZ7 2263 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TNCP24821 2201 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 IGLV10-54A0A075B6I4 117 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TRBV19A0A075B6N1 114 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TGIF2-C20orf24A0A0A6YYL0 155 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TRAV41A0A0B4J266 112 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TRBV6-1A0A0K0K1D8 114 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 RBAKDNA6NC62 111 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 SDHAF1A6NFY7 115 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 E7EUB6 86 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TSTD3H0UI37 97 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 H3BRN7 92 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 K7EIM0 57 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BKO60814 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 LY6HO94772 140 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TCRAP04437 139 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BJP06899 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 CTSGP08311 255 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TRGC1P0CF51 173 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 APELAP0DMC3 54 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BOP23527 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BBP33778 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BDP58876 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TPPP2P59282 170 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 RAB4BP61018 213 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BCP62807 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST2H2BEQ16778 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 IQCJQ1A5X6 159 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 CLEC12BQ2HXU8 276 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 KLK9Q2XQG4 91 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.97□□□□□ -2.09
VPS41-210ENST00000462429 C10orf55Q5SWW7 151 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 SMIM15Q7Z3B0 74 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms