RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 Q6ZSN1 163 aa9.1□□□□□ -0.95
VPS33A-202ENST00000451053 PRO0255Q9UI72 69 aa9.1□□□□□ -0.95
VPS33A-202ENST00000451053 CSMD3Q7Z407 3707 aa9.1□□□□□ -0.95
VPS33A-202ENST00000451053 TRBV6-4A0A1B0GX49 114 aa9.09□□□□□ -0.95
VPS33A-202ENST00000451053 PAX4O43316 350 aa9.09□□□□□ -0.95
VPS33A-202ENST00000451053 NCR2O95944 276 aa9.09□□□□□ -0.95
VPS33A-202ENST00000451053 OR10J3Q5JRS4 329 aa9.09□□□□□ -0.95
VPS33A-202ENST00000451053 TRAV26-2A0A0B4J265 109 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 TRBV10-1A0A0K0K1A3 114 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 LOC100131303A0A0U1RQF7 123 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 SMKR1H3BMG3 65 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 H3BNG1 76 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 M0QY20 66 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BKO60814 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 NUDT3O95989 172 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BJP06899 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BOP23527 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BBP33778 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 TCTAP57738 103 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BDP58876 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BCP62807 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 RHOHQ15669 191 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST2H2BEQ16778 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.08□□□□□ -0.96
VPS33A-202ENST00000451053 SLC25A29Q8N8R3 303 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 C15orf53Q8NAA6 179 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BHQ93079 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 DNAJC30Q96LL9 226 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BNQ99877 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 HIST1H2BMQ99879 126 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 C20orf78Q9BR46 151 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 MAP1LC3AQ9H492 121 aa9.08□□□□□ -0.96
VPS33A-202ENST00000451053 DYNC2H1Q8NCM8 4307 aaKnown RBP9.07□□□□□ -0.96
VPS33A-202ENST00000451053 TRBV6-5A0A0K0K1A5 114 aa9.07□□□□□ -0.96
VPS33A-202ENST00000451053 K7EQD1 137 aa9.07□□□□□ -0.96
VPS33A-202ENST00000451053 TNFRSF6BO95407 300 aa9.07□□□□□ -0.96
VPS33A-202ENST00000451053 Q0VG73 95 aa9.07□□□□□ -0.96
VPS33A-202ENST00000451053 NRACQ8N912 160 aa9.07□□□□□ -0.96
VPS33A-202ENST00000451053 PRADC1Q9BSG0 188 aa9.07□□□□□ -0.96
VPS33A-202ENST00000451053 NIT2Q9NQR4 276 aa9.07□□□□□ -0.96
VPS33A-202ENST00000451053 NPYP01303 97 aa9.06□□□□□ -0.96
VPS33A-202ENST00000451053 GYPEP15421 78 aa9.06□□□□□ -0.96
VPS33A-202ENST00000451053 PMCHP20382 165 aa9.06□□□□□ -0.96
VPS33A-202ENST00000451053 C18orf32Q8TCD1 76 aa9.06□□□□□ -0.96
VPS33A-202ENST00000451053 ST20Q9HBF5 79 aa9.06□□□□□ -0.96
VPS33A-202ENST00000451053 TNFRSF18Q9Y5U5 241 aa9.06□□□□□ -0.96
VPS33A-202ENST00000451053 A0A096LPF7 62 aa9.05□□□□□ -0.96
VPS33A-202ENST00000451053 S100A6P06703 90 aa9.05□□□□□ -0.96
VPS33A-202ENST00000451053 SUMO2P61956 95 aaKnown RBP9.05□□□□□ -0.96
VPS33A-202ENST00000451053 RPL36AP83881 106 aaKnown RBP9.05□□□□□ -0.96
VPS33A-202ENST00000451053 BAGE3Q86Y29 109 aa9.05□□□□□ -0.96
VPS33A-202ENST00000451053 RPL36ALQ969Q0 106 aaKnown RBP9.05□□□□□ -0.96
VPS33A-202ENST00000451053 RPL39LQ96EH5 51 aaKnown RBP9.05□□□□□ -0.96
VPS33A-202ENST00000451053 NXT2Q9NPJ8 142 aaKnown RBP9.05□□□□□ -0.96
VPS33A-202ENST00000451053 Q9UF83 564 aa9.05□□□□□ -0.96
VPS33A-202ENST00000451053 ICOSQ9Y6W8 199 aa9.05□□□□□ -0.96
VPS33A-202ENST00000451053 PRSS47A8MTI9 375 aa9.04□□□□□ -0.96
VPS33A-202ENST00000451053 GAS8-AS1O95177 125 aa9.04□□□□□ -0.96
VPS33A-202ENST00000451053 P0DMU3 169 aa9.04□□□□□ -0.96
VPS33A-202ENST00000451053 FAM231AP0DMU4 169 aa9.04□□□□□ -0.96
VPS33A-202ENST00000451053 FAM231CP0DMU5 169 aa9.04□□□□□ -0.96
VPS33A-202ENST00000451053 RPL32P62910 135 aaKnown RBP9.04□□□□□ -0.96
VPS33A-202ENST00000451053 PRSS3P2Q8NHM4 247 aa9.04□□□□□ -0.96
VPS33A-202ENST00000451053 TMA7Q9Y2S6 64 aaKnown RBP9.04□□□□□ -0.96
VPS33A-202ENST00000451053 TCAPO15273 167 aa9.03□□□□□ -0.96
VPS33A-202ENST00000451053 MRPL23Q16540 153 aaKnown RBP9.03□□□□□ -0.96
VPS33A-202ENST00000451053 NEXN-AS1Q8NBZ9 246 aa9.03□□□□□ -0.96
VPS33A-202ENST00000451053 SMIM2Q9BVW6 85 aa9.03□□□□□ -0.96
VPS33A-202ENST00000451053 TRBV7-3A0A075B6L6 115 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 LOC389332A0A1B0GUA5 103 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 GAGE12JA6NER3 117 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 SDHAF1A6NFY7 115 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 K7EMI3 77 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 VCYO14598 125 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 NDUFA6P56556 154 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 GAGE1Q13065 139 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 GAGE4Q13068 117 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 GAGE5Q13069 117 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 IQCJQ1A5X6 159 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 GAGE13Q4V321 117 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 COA6Q5JTJ3 125 aaKnown RBP9.02□□□□□ -0.97
VPS33A-202ENST00000451053 FA2HQ7L5A8 372 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 Q8N8P6 123 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 LINC00476Q8WZB0 136 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 CHCHD1Q96BP2 118 aaKnown RBP9.02□□□□□ -0.97
VPS33A-202ENST00000451053 TMEM70Q9BUB7 260 aa9.02□□□□□ -0.97
VPS33A-202ENST00000451053 PLECQ15149 4684 aaKnown RBP9.02□□□□□ -0.97
VPS33A-202ENST00000451053 TRBV27A0A0K0K1C4 114 aa9.01□□□□□ -0.97
VPS33A-202ENST00000451053 LINC00694P0DN24 101 aa9.01□□□□□ -0.97
VPS33A-202ENST00000451053 POLR2KP53803 58 aaKnown RBP9.01□□□□□ -0.97
VPS33A-202ENST00000451053 LGALS9CQ6DKI2 356 aa9.01□□□□□ -0.97
VPS33A-202ENST00000451053 KIR2DL4Q99706 377 aa9.01□□□□□ -0.97
VPS33A-202ENST00000451053 LCE6AA0A183 80 aa9□□□□□ -0.97
VPS33A-202ENST00000451053 I3L3M4 83 aa9□□□□□ -0.97
VPS33A-202ENST00000451053 LY6G6CO95867 125 aa9□□□□□ -0.97
VPS33A-202ENST00000451053 LINC00614P0C842 121 aa9□□□□□ -0.97
VPS33A-202ENST00000451053 IFI27P40305 119 aaPredicted RBP9□□□□□ -0.97
VPS33A-202ENST00000451053 ESRGQ1W209 222 aa9□□□□□ -0.97
VPS33A-202ENST00000451053 RNASEKQ6P5S7 137 aaKnown RBP9□□□□□ -0.97
VPS33A-202ENST00000451053 NEGR1Q7Z3B1 354 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms