RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SAMD13Q5VXD3 122 aa6.21□□□□□ -1.41
CD44-208ENST00000428726 Q8N8P6 123 aa6.21□□□□□ -1.41
CD44-208ENST00000428726 NRACQ8N912 160 aa6.21□□□□□ -1.41
CD44-208ENST00000428726 NSD1Q96L73 2696 aaPredicted RBP6.21□□□□□ -1.42
CD44-208ENST00000428726 PRSS47A8MTI9 375 aa6.21□□□□□ -1.42
CD44-208ENST00000428726 ADARB2-AS1A8MUL3 147 aa6.21□□□□□ -1.42
CD44-208ENST00000428726 K7EP34 96 aa6.21□□□□□ -1.42
CD44-208ENST00000428726 SEC11AP67812 179 aa6.21□□□□□ -1.42
CD44-208ENST00000428726 DYNLRB2Q8TF09 96 aa6.21□□□□□ -1.42
CD44-208ENST00000428726 SCGB3A1Q96QR1 104 aa6.21□□□□□ -1.42
CD44-208ENST00000428726 TMEM89A2RUT3 159 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 H3BRM9 83 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 H7C2G1 150 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 RPL35AP18077 110 aaKnown RBP6.2□□□□□ -1.42
CD44-208ENST00000428726 MYOZ3Q8TDC0 251 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 FAM19A4Q96LR4 140 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 APOMO95445 188 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 ID1P41134 155 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 MRAP2Q96G30 205 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 CITED2Q99967 270 aaPredicted RBP6.2□□□□□ -1.42
CD44-208ENST00000428726 MRPL16Q9NX20 251 aaKnown RBP6.2□□□□□ -1.42
CD44-208ENST00000428726 COL6A5A8TX70 2615 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 IGLV2-18A0A075B6J9 118 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 MED14OSP0DP75 135 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 SUMO2P61956 95 aaKnown RBP6.2□□□□□ -1.42
CD44-208ENST00000428726 SNRPD3P62318 126 aaKnown RBP6.2□□□□□ -1.42
CD44-208ENST00000428726 Q6YL49 198 aa6.2□□□□□ -1.42
CD44-208ENST00000428726 LOC107984156A0A0G2JMH3 177 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 LAGE3Q14657 143 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 SUMO4Q6EEV6 95 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 Q6ZSV7 163 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 ARL17AQ8IVW1 177 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 ZNF418Q8TF45 676 aaPredicted RBP6.19□□□□□ -1.42
CD44-208ENST00000428726 DPM2O94777 84 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 AZU1P20160 251 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 NPC2P61916 151 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 UFSP1Q6NVU6 142 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 C2orf66Q6UXQ4 117 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 SCGB1D4Q6XE38 83 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 PTH2Q96A98 100 aa6.19□□□□□ -1.42
CD44-208ENST00000428726 IGKV3OR2-268A0A0C4DH90 116 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 A0A0U1RRA0 63 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 RBMY1BA6NDE4 496 aaKnown RBP6.18□□□□□ -1.42
CD44-208ENST00000428726 RBMY1EA6NEQ0 496 aaKnown RBP6.18□□□□□ -1.42
CD44-208ENST00000428726 DNAJC9-AS1A6NH13 148 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 A8MZ25 164 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 PF4P02776 101 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 RBMY1DP0C7P1 496 aaKnown RBP6.18□□□□□ -1.42
CD44-208ENST00000428726 HLA-DRB4P13762 266 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 SPATA3Q8NHX4 192 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 LINC01587Q99440 93 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 TP53TG1Q9Y2A0 90 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 TSSC4Q9Y5U2 329 aaPredicted RBP6.18□□□□□ -1.42
CD44-208ENST00000428726 HLA-DRB4X5D2U9 266 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 TMEM238C9JI98 176 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 ATP5LO75964 103 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 KRTAP1-3Q8IUG1 177 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 DPH3P1Q9H4G8 78 aa6.18□□□□□ -1.42
CD44-208ENST00000428726 A0A0J9YX75 114 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 SDHAF1A6NFY7 115 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 LGALS1P09382 135 aaKnown RBP6.17□□□□□ -1.42
CD44-208ENST00000428726 Q6ZSN1 163 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 SMIM2Q9BVW6 85 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 TMEM170BQ5T4T1 132 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 OR9G4Q8NGQ1 327 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 ZNF479Q96JC4 524 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 KLLNB2CW77 178 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 G3V4G9 280 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 DEFB4AO15263 64 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 SRSF9Q13242 221 aaKnown RBP eCLIP6.17□□□□□ -1.42
CD44-208ENST00000428726 PLEKHB2Q96CS7 222 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 ZMAT4Q9H898 229 aa6.17□□□□□ -1.42
CD44-208ENST00000428726 K7EQG2 157 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 SIVA1O15304 175 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 CEND1Q8N111 149 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 SPAG8Q99932 426 aaPredicted RBP6.16□□□□□ -1.42
CD44-208ENST00000428726 C20orf78Q9BR46 151 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 MGAM2Q2M2H8 2515 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 FSHBP01225 129 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 ELANEP08246 267 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 ZFP2Q6ZN57 461 aa6.16□□□□□ -1.42
CD44-208ENST00000428726 NDUFA7O95182 113 aa6.15□□□□□ -1.42
CD44-208ENST00000428726 PPP1R17O96001 155 aa6.15□□□□□ -1.42
CD44-208ENST00000428726 C12orf74Q32Q52 190 aa6.15□□□□□ -1.42
CD44-208ENST00000428726 ORMDL2Q53FV1 153 aa6.15□□□□□ -1.42
CD44-208ENST00000428726 RAX2Q96IS3 184 aa6.15□□□□□ -1.42
CD44-208ENST00000428726 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.15□□□□□ -1.43
CD44-208ENST00000428726 A0A1B0GWB2 263 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 IGKV2-29A2NJV5 120 aaPredicted RBP6.15□□□□□ -1.43
CD44-208ENST00000428726 OR11H12B2RN74 326 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 LGALS9O00182 355 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 PSMB2P49721 201 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 OR11H2Q8NH07 326 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 ODF3Q96PU9 254 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 PGPEP1Q9NXJ5 209 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 CHTOPQ9Y3Y2 248 aaKnown RBP6.15□□□□□ -1.43
CD44-208ENST00000428726 IGHV1OR15-1A0A075B7D0 117 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 LINC01549A6NIU2 74 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 ZNF815PA8K554 130 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 IGLL5B9A064 214 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms