RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 NDUFA3O95167 84 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 IGKV1-16P04430 117 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 CRYGDP07320 174 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 RD3LP0DJH9 198 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 GZMBP10144 247 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 DEFA4P12838 97 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 FABP4P15090 132 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 CCL3L1P16619 93 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 CRYBB3P26998 211 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 DDTP30046 118 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 OR10J1P30954 320 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 FUSP35637 526 aaKnown RBP eCLIP1.05□□□□□ -2.24
PTPRC-208ENST00000427110 CA7P43166 264 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 GNG10P50151 68 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 CEBPGP53567 150 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 RAB4BP61018 213 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 CCL8P80075 99 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 WT1-ASQ06250 92 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 BSPH1Q075Z2 132 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 LTC4SQ16873 150 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 KRTAP6-3Q3LI67 103 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 VMA21Q3ZAQ7 101 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 SPINK9Q5DT21 86 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 FAM201AQ5SY85 155 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 FAM78BQ5VT40 261 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 SPATA31B1PQ5VZV4 182 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 PATE2Q6UY27 113 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 MIR17HGQ75NE6 70 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 ATP5L2Q7Z4Y8 100 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 FAM216BQ8N7L0 139 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 OR11H6Q8NGC7 330 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 OR10X1Q8NGY0 326 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 ZNRF2Q8NHG8 242 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 SGMS2Q8NHU3 365 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 TRGV9Q99603 122 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 CCL13Q99616 98 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 DERL1Q9BUN8 251 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 COMMD5Q9GZQ3 224 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 TMEM133Q9H2Q1 129 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 TMEM106BQ9NUM4 274 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 MRPL27Q9P0M9 148 aaKnown RBP1.05□□□□□ -2.24
PTPRC-208ENST00000427110 TMEM14CQ9P0S9 112 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 AMMECR1Q9Y4X0 333 aaPredicted RBP1.05□□□□□ -2.24
PTPRC-208ENST00000427110 V9GYV3 84 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 LAMA5O15230 3695 aa1.05□□□□□ -2.24
PTPRC-208ENST00000427110 SMG1Q96Q15 3661 aaKnown RBP1.05□□□□□ -2.24
PTPRC-208ENST00000427110 PTPRZ1P23471 2315 aaPredicted RBP1.05□□□□□ -2.24
PTPRC-208ENST00000427110 TPRP12270 2363 aaKnown RBP1.05□□□□□ -2.24
PTPRC-208ENST00000427110 DCHS1Q96JQ0 3298 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 HRNRQ86YZ3 2850 aaPredicted RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 DCHS2Q6V1P9 2916 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 SPTBN1Q01082 2364 aaKnown RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ZZEF1O43149 2961 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 DMXL2Q8TDJ6 3036 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ABCA2Q9BZC7 2435 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ADGRG4Q8IZF6 3080 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 TRAV30A0A087WSZ9 112 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 C19orf71A6NCJ1 209 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ODF3BA8MYP8 253 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 OOSP1A8MZH6 123 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 HSBP1L1C9JCN9 74 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 BUB1B-PAK6H3BSN5 160 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 I3L2K1 104 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 M0R1W7 72 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 SLC17A3O00476 420 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 NUPR1O60356 82 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 HYPMO75409 117 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 IGHV3-7P01780 117 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 GPX1P07203 203 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 NBEAP1P0C6P0 100 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 IGLC1P0CG04 106 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 HIST1H1EP10412 219 aaKnown RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ORM2P19652 201 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 BRS3P32247 399 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 RPL27AP46776 148 aaKnown RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 GNG4P50150 75 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 FOXA3P55318 350 aaPredicted RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 TPPP2P59282 170 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 KRTAP12-4P60329 112 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 UBE2G2P60604 165 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 RANP62826 216 aaKnown RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ZNF90Q03938 601 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 PDE6HQ13956 83 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 DIAPH2-AS1Q14236 149 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 IQCJQ1A5X6 159 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 IBA57Q5T440 356 aaKnown RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 C1orf194Q5T5A4 169 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 C10orf113Q5VZT2 155 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 TOMM20LQ6UXN7 152 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 LINC00305Q7Z4B0 112 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 Q8N6K4 173 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ZFAND2AQ8N6M9 145 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 C5orf17Q8NAS9 161 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 ST6GALNAC3Q8NDV1 305 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 DEFB108BQ8NET1 73 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 NUP35Q8NFH5 326 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 OR4B1Q8NGF8 309 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 TSKUQ8WUA8 353 aa1.04□□□□□ -2.24
PTPRC-208ENST00000427110 H1FXQ92522 213 aaKnown RBP1.04□□□□□ -2.24
PTPRC-208ENST00000427110 LEAP2Q969E1 77 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms