RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 C3orf79P0CE67 100 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 GAGE12FP0CL80 117 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 GAGE12GP0CL81 117 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 GAGE12IP0CL82 117 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 P0DMU3 169 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 FAM231AP0DMU4 169 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 FAM231CP0DMU5 169 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 ZFP2Q6ZN57 461 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 ZNF479Q96JC4 524 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 TMEM70Q9BUB7 260 aa10.05□□□□□ -0.8
GPNMB-203ENST00000409458 IGHV3-53P01767 116 aa10.04□□□□□ -0.8
GPNMB-203ENST00000409458 RPL32P62910 135 aaKnown RBP10.04□□□□□ -0.8
GPNMB-203ENST00000409458 OR11H2Q8NH07 326 aa10.04□□□□□ -0.8
GPNMB-203ENST00000409458 NIT2Q9NQR4 276 aa10.04□□□□□ -0.8
GPNMB-203ENST00000409458 SDHAF1A6NFY7 115 aa10.03□□□□□ -0.8
GPNMB-203ENST00000409458 H7C1H1 209 aa10.03□□□□□ -0.8
GPNMB-203ENST00000409458 POLR2KP53803 58 aaKnown RBP10.03□□□□□ -0.8
GPNMB-203ENST00000409458 LAGE3Q14657 143 aa10.03□□□□□ -0.8
GPNMB-203ENST00000409458 TRGV2A0A075B6R0 118 aa10.02□□□□□ -0.8
GPNMB-203ENST00000409458 SCGB1D1O95968 90 aa10.02□□□□□ -0.8
GPNMB-203ENST00000409458 FCER1GP30273 86 aa10.02□□□□□ -0.8
GPNMB-203ENST00000409458 Q8N976 141 aa10.02□□□□□ -0.8
GPNMB-203ENST00000409458 RNF183Q96D59 192 aa10.02□□□□□ -0.8
GPNMB-203ENST00000409458 Q9UF83 564 aa10.02□□□□□ -0.8
GPNMB-203ENST00000409458 HSPB8Q9UJY1 196 aa10.02□□□□□ -0.8
GPNMB-203ENST00000409458 IGHV4-28A0A0C4DH34 117 aa10.02□□□□□ -0.81
GPNMB-203ENST00000409458 DEFB104AQ8WTQ1 72 aa10.02□□□□□ -0.81
GPNMB-203ENST00000409458 TRBV27A0A0K0K1C4 114 aa10.01□□□□□ -0.81
GPNMB-203ENST00000409458 SPATA12Q7Z6I5 190 aa10.01□□□□□ -0.81
GPNMB-203ENST00000409458 LINC00612Q8N6U2 182 aa10.01□□□□□ -0.81
GPNMB-203ENST00000409458 Q8NAQ8 132 aa10.01□□□□□ -0.81
GPNMB-203ENST00000409458 NEXN-AS1Q8NBZ9 246 aa10.01□□□□□ -0.81
GPNMB-203ENST00000409458 VCYO14598 125 aa10□□□□□ -0.81
GPNMB-203ENST00000409458 DEFB4AO15263 64 aa10□□□□□ -0.81
GPNMB-203ENST00000409458 NUDT3O95989 172 aa10□□□□□ -0.81
GPNMB-203ENST00000409458 BTF3P20290 206 aaKnown RBP10□□□□□ -0.81
GPNMB-203ENST00000409458 ORMDL2Q53FV1 153 aa10□□□□□ -0.81
GPNMB-203ENST00000409458 LURAP1LQ8IV03 231 aa10□□□□□ -0.81
GPNMB-203ENST00000409458 K7EMI3 77 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 MIFP14174 115 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 RETNQ9HD89 108 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 SYS1-DBNDD2H3BUS1 97 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 K7EQD1 137 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 PRB2P02812 416 aaPredicted RBP9.99□□□□□ -0.81
GPNMB-203ENST00000409458 DEFB130BP0DP73 79 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 DEFB130AP0DP74 79 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 FAM222AQ5U5X8 452 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 C18orf15Q96N68 181 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 KIR2DL4Q99706 377 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 MAP1LC3CQ9BXW4 147 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 TNFRSF18Q9Y5U5 241 aa9.99□□□□□ -0.81
GPNMB-203ENST00000409458 TSHBP01222 138 aa9.98□□□□□ -0.81
GPNMB-203ENST00000409458 NBEAL2Q6ZNJ1 2754 aa9.98□□□□□ -0.81
GPNMB-203ENST00000409458 LYRM9A8MSI8 78 aa9.97□□□□□ -0.81
GPNMB-203ENST00000409458 H0Y8G0 127 aa9.97□□□□□ -0.81
GPNMB-203ENST00000409458 I3L3M4 83 aa9.97□□□□□ -0.81
GPNMB-203ENST00000409458 SLC25A29Q8N8R3 303 aa9.97□□□□□ -0.81
GPNMB-203ENST00000409458 DNAJC30Q96LL9 226 aa9.97□□□□□ -0.81
GPNMB-203ENST00000409458 DKK2Q9UBU2 259 aa9.97□□□□□ -0.81
GPNMB-203ENST00000409458 KPRPQ5T749 579 aaPredicted RBP9.96□□□□□ -0.81
GPNMB-203ENST00000409458 TOMM6Q96B49 74 aa9.96□□□□□ -0.81
GPNMB-203ENST00000409458 IFI27L1Q96BM0 104 aa9.96□□□□□ -0.81
GPNMB-203ENST00000409458 CELA1Q9UNI1 258 aa9.96□□□□□ -0.81
GPNMB-203ENST00000409458 CIDEAO60543 219 aa9.96□□□□□ -0.82
GPNMB-203ENST00000409458 FHL2Q14192 279 aa9.96□□□□□ -0.82
GPNMB-203ENST00000409458 C2orf66Q6UXQ4 117 aa9.96□□□□□ -0.82
GPNMB-203ENST00000409458 TP53TG1Q9Y2A0 90 aa9.96□□□□□ -0.82
GPNMB-203ENST00000409458 TRGV4A0A0C4DH28 118 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 TRBV10-1A0A0K0K1A3 114 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 K7EIL1 84 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 RIPPLY3P57055 190 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 RHOHQ15669 191 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 PET117Q6UWS5 81 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 TEX43Q6ZNM6 134 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 ZNRF2Q8NHG8 242 aa9.95□□□□□ -0.82
GPNMB-203ENST00000409458 IGHV3-38A0A0C4DH36 116 aa9.94□□□□□ -0.82
GPNMB-203ENST00000409458 PHLDA1Q8WV24 401 aaPredicted RBP9.94□□□□□ -0.82
GPNMB-203ENST00000409458 TRBV7-3A0A075B6L6 115 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 LOC100131303A0A0U1RQF7 123 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 TRBV6-4A0A1B0GX49 114 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 RPL39P62891 51 aaKnown RBP9.93□□□□□ -0.82
GPNMB-203ENST00000409458 ATOH7Q8N100 152 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 C20orf202A1L168 122 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 GAGE12JA6NER3 117 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 ATP5LO75964 103 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 RPL36AP83881 106 aaKnown RBP9.93□□□□□ -0.82
GPNMB-203ENST00000409458 GAGE1Q13065 139 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 GAGE4Q13068 117 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 GAGE5Q13069 117 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 GAGE13Q4V321 117 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 LINC01545Q5VT33 79 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 RPL36ALQ969Q0 106 aaKnown RBP9.93□□□□□ -0.82
GPNMB-203ENST00000409458 SCGB3A1Q96QR1 104 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 PMCHL2Q9BQD1 86 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 CYSLTR1Q9Y271 337 aa9.93□□□□□ -0.82
GPNMB-203ENST00000409458 DAD1P61803 113 aa9.92□□□□□ -0.82
GPNMB-203ENST00000409458 S100A12P80511 92 aa9.92□□□□□ -0.82
GPNMB-203ENST00000409458 SPART-AS1P0CW21 52 aa9.91□□□□□ -0.82
GPNMB-203ENST00000409458 UBE2D3P61077 147 aa9.91□□□□□ -0.82
GPNMB-203ENST00000409458 UBE2D2P62837 147 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms