RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TRBV10-1A0A0K0K1A3 114 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 LOC100131303A0A0U1RQF7 123 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 GAGE12JA6NER3 117 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 PPP1R17O96001 155 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 RPL36AP83881 106 aaKnown RBP12.67□□□□□ -0.38
SDC1-203ENST00000403076 GAGE1Q13065 139 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 GAGE4Q13068 117 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 GAGE5Q13069 117 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 GAGE13Q4V321 117 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 RPL36ALQ969Q0 106 aaKnown RBP12.67□□□□□ -0.38
SDC1-203ENST00000403076 VSIG2Q96IQ7 327 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 TNFRSF6BO95407 300 aa12.66□□□□□ -0.38
SDC1-203ENST00000403076 NEXN-AS1Q8NBZ9 246 aa12.66□□□□□ -0.38
SDC1-203ENST00000403076 ZNRF2Q8NHG8 242 aa12.66□□□□□ -0.38
SDC1-203ENST00000403076 Q9UF83 564 aa12.66□□□□□ -0.38
SDC1-203ENST00000403076 SRIP30626 198 aa12.65□□□□□ -0.38
SDC1-203ENST00000403076 DNAJC30Q96LL9 226 aa12.65□□□□□ -0.38
SDC1-203ENST00000403076 ST20Q9HBF5 79 aa12.65□□□□□ -0.38
SDC1-203ENST00000403076 NPYP01303 97 aa12.64□□□□□ -0.39
SDC1-203ENST00000403076 NRACQ8N912 160 aa12.64□□□□□ -0.39
SDC1-203ENST00000403076 ALKBH7Q9BT30 221 aaPredicted RBP12.64□□□□□ -0.39
SDC1-203ENST00000403076 TRBV7-3A0A075B6L6 115 aa12.63□□□□□ -0.39
SDC1-203ENST00000403076 IGLL5B9A064 214 aa12.63□□□□□ -0.39
SDC1-203ENST00000403076 WWC2-AS2Q96NR7 200 aa12.63□□□□□ -0.39
SDC1-203ENST00000403076 LAMTOR2Q9Y2Q5 125 aa12.63□□□□□ -0.39
SDC1-203ENST00000403076 ICOSQ9Y6W8 199 aa12.63□□□□□ -0.39
SDC1-203ENST00000403076 PHOX2AO14813 284 aa12.62□□□□□ -0.39
SDC1-203ENST00000403076 NUDT3O95989 172 aa12.62□□□□□ -0.39
SDC1-203ENST00000403076 MRPL23Q16540 153 aaKnown RBP12.62□□□□□ -0.39
SDC1-203ENST00000403076 NUPR2A6NF83 97 aa12.62□□□□□ -0.39
SDC1-203ENST00000403076 H3BNG1 76 aa12.62□□□□□ -0.39
SDC1-203ENST00000403076 CEMP1Q6PRD7 247 aaPredicted RBP12.62□□□□□ -0.39
SDC1-203ENST00000403076 A0A096LPF7 62 aa12.61□□□□□ -0.39
SDC1-203ENST00000403076 TRBV6-5A0A0K0K1A5 114 aa12.61□□□□□ -0.39
SDC1-203ENST00000403076 LOC389332A0A1B0GUA5 103 aa12.61□□□□□ -0.39
SDC1-203ENST00000403076 SDHAF1A6NFY7 115 aa12.61□□□□□ -0.39
SDC1-203ENST00000403076 SUMO2P61956 95 aaKnown RBP12.61□□□□□ -0.39
SDC1-203ENST00000403076 C20orf78Q9BR46 151 aa12.61□□□□□ -0.39
SDC1-203ENST00000403076 MAP1LC3AQ9H492 121 aa12.61□□□□□ -0.39
SDC1-203ENST00000403076 TGP01266 2768 aa12.6□□□□□ -0.39
SDC1-203ENST00000403076 C1orf196B1AJZ1 125 aa12.6□□□□□ -0.39
SDC1-203ENST00000403076 ZFAND6Q6FIF0 208 aa12.6□□□□□ -0.39
SDC1-203ENST00000403076 MUC7Q8TAX7 377 aa12.6□□□□□ -0.39
SDC1-203ENST00000403076 KLK5Q9Y337 293 aaPredicted RBP12.6□□□□□ -0.39
SDC1-203ENST00000403076 UBE2D3P61077 147 aa12.59□□□□□ -0.39
SDC1-203ENST00000403076 UBE2D2P62837 147 aa12.59□□□□□ -0.39
SDC1-203ENST00000403076 C15orf53Q8NAA6 179 aa12.59□□□□□ -0.39
SDC1-203ENST00000403076 ATP6V0E2Q8NHE4 81 aa12.59□□□□□ -0.39
SDC1-203ENST00000403076 TMEM70Q9BUB7 260 aa12.59□□□□□ -0.39
SDC1-203ENST00000403076 IGHV3-38A0A0C4DH36 116 aa12.58□□□□□ -0.4
SDC1-203ENST00000403076 PMCHP20382 165 aa12.58□□□□□ -0.4
SDC1-203ENST00000403076 NEGR1Q7Z3B1 354 aa12.58□□□□□ -0.4
SDC1-203ENST00000403076 SH2D6Q7Z4S9 175 aa12.58□□□□□ -0.4
SDC1-203ENST00000403076 VCYO14598 125 aa12.57□□□□□ -0.4
SDC1-203ENST00000403076 POLR2KP53803 58 aaKnown RBP12.57□□□□□ -0.4
SDC1-203ENST00000403076 IQCJQ1A5X6 159 aa12.57□□□□□ -0.4
SDC1-203ENST00000403076 PRSS3P2Q8NHM4 247 aa12.57□□□□□ -0.4
SDC1-203ENST00000403076 DAZ4Q86SG3 579 aaKnown RBP12.57□□□□□ -0.4
SDC1-203ENST00000403076 C18orf32Q8TCD1 76 aa12.57□□□□□ -0.4
SDC1-203ENST00000403076 DEFB104AQ8WTQ1 72 aa12.57□□□□□ -0.4
SDC1-203ENST00000403076 SMIM2Q9BVW6 85 aa12.57□□□□□ -0.4
SDC1-203ENST00000403076 DAZ3Q9NR90 486 aaKnown RBP12.57□□□□□ -0.4
SDC1-203ENST00000403076 I3L3M4 83 aa12.56□□□□□ -0.4
SDC1-203ENST00000403076 LINC00694P0DN24 101 aa12.56□□□□□ -0.4
SDC1-203ENST00000403076 PRSS47A8MTI9 375 aa12.55□□□□□ -0.4
SDC1-203ENST00000403076 RPL32P62910 135 aaKnown RBP12.55□□□□□ -0.4
SDC1-203ENST00000403076 KIR2DL4Q99706 377 aa12.55□□□□□ -0.4
SDC1-203ENST00000403076 NXT2Q9NPJ8 142 aaKnown RBP12.55□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BKO60814 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BJP06899 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BOP23527 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 FCER1GP30273 86 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BBP33778 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 IFI27P40305 119 aaPredicted RBP12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BDP58876 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 RAB5BP61020 215 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BCP62807 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 COTL1Q14019 142 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST2H2BEQ16778 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.54□□□□□ -0.4
SDC1-203ENST00000403076 BAGE3Q86Y29 109 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 Q8N8P6 123 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BHQ93079 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BNQ99877 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 HIST1H2BMQ99879 126 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 GTSF1LQ9H1H1 148 aa12.54□□□□□ -0.4
SDC1-203ENST00000403076 TRBV27A0A0K0K1C4 114 aa12.53□□□□□ -0.4
SDC1-203ENST00000403076 FA2HQ7L5A8 372 aa12.53□□□□□ -0.4
SDC1-203ENST00000403076 Q0VG73 95 aa12.52□□□□□ -0.41
SDC1-203ENST00000403076 TMEM97Q5BJF2 176 aa12.52□□□□□ -0.41
SDC1-203ENST00000403076 APLNQ9ULZ1 77 aa12.52□□□□□ -0.41
SDC1-203ENST00000403076 TCAPO15273 167 aa12.51□□□□□ -0.41
SDC1-203ENST00000403076 LYPD5Q6UWN5 251 aa12.51□□□□□ -0.41
SDC1-203ENST00000403076 NIT1Q86X76 327 aa12.51□□□□□ -0.41
SDC1-203ENST00000403076 IGLV2-18A0A075B6J9 118 aa12.5□□□□□ -0.41
SDC1-203ENST00000403076 TSHBP01222 138 aa12.5□□□□□ -0.41
SDC1-203ENST00000403076 TCTAP57738 103 aa12.5□□□□□ -0.41
SDC1-203ENST00000403076 RNASEKQ6P5S7 137 aaKnown RBP12.5□□□□□ -0.41
SDC1-203ENST00000403076 LINC00614P0C842 121 aa12.49□□□□□ -0.41
SDC1-203ENST00000403076 AMTP48728 403 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms