RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 MDFIQ99750 246 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 RETNQ9HD89 108 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 AZU1P20160 251 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 CKS1BP61024 79 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 NEGR1Q7Z3B1 354 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 LYPD1Q8N2G4 141 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 ZFAND3Q9H8U3 227 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 K7EMT4 169 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 TMEM89A2RUT3 159 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 FGF6P10767 208 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 ZNF479Q96JC4 524 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 CUBNO60494 3623 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 PCP2Q8IVA1 136 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 AMN1Q8IY45 258 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 C20orf173Q96LM9 149 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 TRAV26-2A0A0B4J265 109 aa7.72□□□□□ -1.17
COL6A3-205ENST00000392004 NDUFA7O95182 113 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 FAM104BQ5XKR9 115 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 ADAMTSL5Q6ZMM2 481 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 VCX2Q9H322 139 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 MAP1LC3AQ9H492 121 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 TMEM14CQ9P0S9 112 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 U3KQE9 123 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 OTOGQ6ZRI0 2925 aa7.71□□□□□ -1.17
COL6A3-205ENST00000392004 A0A087WX48 190 aa7.71□□□□□ -1.18
COL6A3-205ENST00000392004 TEX48A0A1B0GUV7 120 aa7.71□□□□□ -1.18
COL6A3-205ENST00000392004 MRGPRG-AS1Q2M3A8 158 aa7.71□□□□□ -1.18
COL6A3-205ENST00000392004 PRIMA1Q86XR5 153 aa7.71□□□□□ -1.18
COL6A3-205ENST00000392004 NHP2Q9NX24 153 aaKnown RBP7.71□□□□□ -1.18
COL6A3-205ENST00000392004 KIR2DL4Q99706 377 aa7.71□□□□□ -1.18
COL6A3-205ENST00000392004 MXRA5Q9NR99 2828 aa7.7□□□□□ -1.18
COL6A3-205ENST00000392004 INSL3P51460 131 aa7.7□□□□□ -1.18
COL6A3-205ENST00000392004 SCGB1A1P11684 91 aa7.7□□□□□ -1.18
COL6A3-205ENST00000392004 ZFAND6Q6FIF0 208 aa7.7□□□□□ -1.18
COL6A3-205ENST00000392004 MRPL51Q4U2R6 128 aaKnown RBP7.69□□□□□ -1.18
COL6A3-205ENST00000392004 CHAC1Q9BUX1 264 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 TRBV6-1A0A0K0K1D8 114 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 BRI3O95415 125 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 TMEM160Q9NX00 188 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 DKK2Q9UBU2 259 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 K7EQG2 157 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 IGHV4-30-4P0DP06 118 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 Q6ZQT7 251 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 MSRB1Q9NZV6 116 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 MDFICQ9P1T7 246 aa7.69□□□□□ -1.18
COL6A3-205ENST00000392004 A0A0J9YX75 114 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 IGLL5B9A064 214 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 F8W735 103 aaPredicted RBP7.68□□□□□ -1.18
COL6A3-205ENST00000392004 Q8N1Y9 231 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 IGLV2-11P01706 119 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 ZNF493Q6ZR52 646 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 TOMM7Q9P0U1 55 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 CLPSL2Q6UWE3 100 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 JPT2Q9H910 190 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 GAGE12HA6NDE8 117 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 IGKCP01834 107 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 FXYD2P54710 66 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 GATD1Q8NB37 220 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 ZNRF2Q8NHG8 242 aa7.68□□□□□ -1.18
COL6A3-205ENST00000392004 K7ERJ3 54 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 NPYP01303 97 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 CR1P17927 2039 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 H3BMM0 161 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 FSHBP01225 129 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 A0A096LNJ9 63 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 F8W1H4 67 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 H7C1H1 209 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 DPM2O94777 84 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 HIGD1BQ9P298 99 aa7.67□□□□□ -1.18
COL6A3-205ENST00000392004 HIST1H4GQ99525 98 aa7.66□□□□□ -1.18
COL6A3-205ENST00000392004 PRADC1Q9BSG0 188 aa7.66□□□□□ -1.18
COL6A3-205ENST00000392004 NXT2Q9NPJ8 142 aaKnown RBP7.66□□□□□ -1.18
COL6A3-205ENST00000392004 ATP5LO75964 103 aa7.66□□□□□ -1.18
COL6A3-205ENST00000392004 MYOZ3Q8TDC0 251 aa7.66□□□□□ -1.18
COL6A3-205ENST00000392004 RPL36AP83881 106 aaKnown RBP7.66□□□□□ -1.18
COL6A3-205ENST00000392004 ODF3L2Q3SX64 289 aa7.66□□□□□ -1.18
COL6A3-205ENST00000392004 RPL36ALQ969Q0 106 aaKnown RBP7.66□□□□□ -1.18
COL6A3-205ENST00000392004 C11orf68Q9H3H3 251 aaKnown RBP7.66□□□□□ -1.18
COL6A3-205ENST00000392004 U3KQK5 164 aa7.66□□□□□ -1.18
COL6A3-205ENST00000392004 PAX4O43316 350 aa7.65□□□□□ -1.18
COL6A3-205ENST00000392004 ZC2HC1BQ5TFG8 222 aa7.65□□□□□ -1.18
COL6A3-205ENST00000392004 Q9HAA7 133 aa7.65□□□□□ -1.18
COL6A3-205ENST00000392004 LGALS9O00182 355 aa7.65□□□□□ -1.18
COL6A3-205ENST00000392004 ZNF80P51504 273 aaPredicted RBP7.65□□□□□ -1.18
COL6A3-205ENST00000392004 LINC01559Q495D7 138 aa7.65□□□□□ -1.18
COL6A3-205ENST00000392004 CRIP1P50238 77 aa7.65□□□□□ -1.19
COL6A3-205ENST00000392004 ETDBQ3ZM63 59 aa7.65□□□□□ -1.19
COL6A3-205ENST00000392004 CEND1Q8N111 149 aa7.65□□□□□ -1.19
COL6A3-205ENST00000392004 TTTY13Q9BZ97 58 aa7.65□□□□□ -1.19
COL6A3-205ENST00000392004 C16orf95Q9H693 158 aa7.65□□□□□ -1.19
COL6A3-205ENST00000392004 WFDC2Q14508 124 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 TRBV25-1A0A075B6N4 114 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 TRAV25A0A0B4J276 109 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 A0A1B0GWB2 263 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 SPART-AS1P0CW21 52 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 HLA-DRB4P13762 266 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 GATA1P15976 413 aaPredicted RBP7.64□□□□□ -1.19
COL6A3-205ENST00000392004 SUMO2P61956 95 aaKnown RBP7.64□□□□□ -1.19
COL6A3-205ENST00000392004 FAM222AQ5U5X8 452 aa7.64□□□□□ -1.19
COL6A3-205ENST00000392004 GEMIN7Q9H840 131 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms