RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 P0DMU3 169 aa19.1■□□□□ 0.65
MSX1-201ENST00000382723 FAM231AP0DMU4 169 aa19.1■□□□□ 0.65
MSX1-201ENST00000382723 FAM231CP0DMU5 169 aa19.1■□□□□ 0.65
MSX1-201ENST00000382723 SUMO2P61956 95 aaKnown RBP19.1■□□□□ 0.65
MSX1-201ENST00000382723 PMCHL1Q16048 86 aa19.1■□□□□ 0.65
MSX1-201ENST00000382723 MRAPQ8TCY5 172 aa19.09■□□□□ 0.65
MSX1-201ENST00000382723 C20orf78Q9BR46 151 aa19.09■□□□□ 0.65
MSX1-201ENST00000382723 ST20Q9HBF5 79 aa19.09■□□□□ 0.65
MSX1-201ENST00000382723 AP5S1Q9NUS5 200 aa19.09■□□□□ 0.65
MSX1-201ENST00000382723 PCP4L1A6NKN8 68 aa19.08■□□□□ 0.65
MSX1-201ENST00000382723 H7C1H1 209 aa19.08■□□□□ 0.65
MSX1-201ENST00000382723 LYRM9A8MSI8 78 aa19.08■□□□□ 0.64
MSX1-201ENST00000382723 AMTP48728 403 aa19.08■□□□□ 0.64
MSX1-201ENST00000382723 TMEM18Q96B42 140 aa19.08■□□□□ 0.64
MSX1-201ENST00000382723 NXT2Q9NPJ8 142 aaKnown RBP19.08■□□□□ 0.64
MSX1-201ENST00000382723 DKK2Q9UBU2 259 aa19.08■□□□□ 0.64
MSX1-201ENST00000382723 LINC00612Q8N6U2 182 aa19.07■□□□□ 0.64
MSX1-201ENST00000382723 Q8N8P6 123 aa19.07■□□□□ 0.64
MSX1-201ENST00000382723 SMIM2Q9BVW6 85 aa19.07■□□□□ 0.64
MSX1-201ENST00000382723 NIT2Q9NQR4 276 aa19.07■□□□□ 0.64
MSX1-201ENST00000382723 NACAE9PAV3 2078 aa19.07■□□□□ 0.64
MSX1-201ENST00000382723 PRSS47A8MTI9 375 aa19.06■□□□□ 0.64
MSX1-201ENST00000382723 IGLV2-18A0A075B6J9 118 aa19.06■□□□□ 0.64
MSX1-201ENST00000382723 NEGR1Q7Z3B1 354 aa19.06■□□□□ 0.64
MSX1-201ENST00000382723 OR10D4PQ8NGN7 298 aa19.06■□□□□ 0.64
MSX1-201ENST00000382723 Q9UF83 564 aa19.06■□□□□ 0.64
MSX1-201ENST00000382723 CELA1Q9UNI1 258 aa19.06■□□□□ 0.64
MSX1-201ENST00000382723 EDA2RQ9HAV5 297 aa19.05■□□□□ 0.64
MSX1-201ENST00000382723 IGHV1-24A0A0C4DH33 117 aa19.04■□□□□ 0.64
MSX1-201ENST00000382723 PYY3Q5JQD4 70 aa19.04■□□□□ 0.64
MSX1-201ENST00000382723 PACRGQ96M98 296 aaPredicted RBP19.04■□□□□ 0.64
MSX1-201ENST00000382723 TRGV4A0A0C4DH28 118 aa19.03■□□□□ 0.64
MSX1-201ENST00000382723 TRBV6-5A0A0K0K1A5 114 aa19.03■□□□□ 0.64
MSX1-201ENST00000382723 SDHAF1A6NFY7 115 aa19.03■□□□□ 0.64
MSX1-201ENST00000382723 TCAPO15273 167 aa19.03■□□□□ 0.64
MSX1-201ENST00000382723 TMEM70Q9BUB7 260 aa19.03■□□□□ 0.64
MSX1-201ENST00000382723 DNHD1Q96M86 4753 aa19.02■□□□□ 0.64
MSX1-201ENST00000382723 DEFB104AQ8WTQ1 72 aa19.02■□□□□ 0.64
MSX1-201ENST00000382723 SPART-AS1P0CW21 52 aa19.01■□□□□ 0.63
MSX1-201ENST00000382723 DAD1P61803 113 aa19.01■□□□□ 0.63
MSX1-201ENST00000382723 TNFRSF18Q9Y5U5 241 aa19.01■□□□□ 0.63
MSX1-201ENST00000382723 POLR2KP53803 58 aaKnown RBP19■□□□□ 0.63
MSX1-201ENST00000382723 SLC25A29Q8N8R3 303 aa19■□□□□ 0.63
MSX1-201ENST00000382723 NEXN-AS1Q8NBZ9 246 aa19■□□□□ 0.63
MSX1-201ENST00000382723 C18orf15Q96N68 181 aa19■□□□□ 0.63
MSX1-201ENST00000382723 K7EQD1 137 aa19■□□□□ 0.63
MSX1-201ENST00000382723 CIDEAO60543 219 aa19■□□□□ 0.63
MSX1-201ENST00000382723 FHL2Q14192 279 aa19■□□□□ 0.63
MSX1-201ENST00000382723 LINC01546A6NGU7 62 aa18.99■□□□□ 0.63
MSX1-201ENST00000382723 VCYO14598 125 aa18.98■□□□□ 0.63
MSX1-201ENST00000382723 SPATA25Q9BR10 227 aa18.98■□□□□ 0.63
MSX1-201ENST00000382723 RPL32P62910 135 aaKnown RBP18.98■□□□□ 0.63
MSX1-201ENST00000382723 LAGE3Q14657 143 aa18.97■□□□□ 0.63
MSX1-201ENST00000382723 TM2D3Q9BRN9 247 aa18.97■□□□□ 0.63
MSX1-201ENST00000382723 A0A096LNJ9 63 aa18.96■□□□□ 0.63
MSX1-201ENST00000382723 CDPF1Q6NVV7 123 aa18.96■□□□□ 0.63
MSX1-201ENST00000382723 TRBV27A0A0K0K1C4 114 aa18.95■□□□□ 0.62
MSX1-201ENST00000382723 DNAJC30Q96LL9 226 aa18.95■□□□□ 0.62
MSX1-201ENST00000382723 KIR2DL4Q99706 377 aa18.94■□□□□ 0.62
MSX1-201ENST00000382723 TRBV6-4A0A1B0GX49 114 aa18.94■□□□□ 0.62
MSX1-201ENST00000382723 ZNRF2Q8NHG8 242 aa18.94■□□□□ 0.62
MSX1-201ENST00000382723 C11orf68Q9H3H3 251 aaKnown RBP18.94■□□□□ 0.62
MSX1-201ENST00000382723 A0A0J9YWU9 116 aa18.93■□□□□ 0.62
MSX1-201ENST00000382723 HHLA3Q9XRX5 114 aa18.93■□□□□ 0.62
MSX1-201ENST00000382723 TRBV10-1A0A0K0K1A3 114 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 LOC100131303A0A0U1RQF7 123 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 I3L3M4 83 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 LEPROTL1O95214 131 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 HBDP02042 147 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 S100A12P80511 92 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 TEX48A0A1B0GUV7 120 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 GAGE12JA6NER3 117 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 NUDT3O95989 172 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 BTF3P20290 206 aaKnown RBP18.92■□□□□ 0.62
MSX1-201ENST00000382723 FCER1GP30273 86 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 GAGE1Q13065 139 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 GAGE4Q13068 117 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 GAGE5Q13069 117 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 GAGE13Q4V321 117 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 LINC00173Q6ZV60 143 aa18.92■□□□□ 0.62
MSX1-201ENST00000382723 PHLDA1Q8WV24 401 aaPredicted RBP18.92■□□□□ 0.62
MSX1-201ENST00000382723 TRBV7-3A0A075B6L6 115 aa18.91■□□□□ 0.62
MSX1-201ENST00000382723 IGHV3-38A0A0C4DH36 116 aa18.91■□□□□ 0.62
MSX1-201ENST00000382723 RPL36AP83881 106 aaKnown RBP18.91■□□□□ 0.62
MSX1-201ENST00000382723 ORMDL2Q53FV1 153 aa18.91■□□□□ 0.62
MSX1-201ENST00000382723 RPL36ALQ969Q0 106 aaKnown RBP18.91■□□□□ 0.62
MSX1-201ENST00000382723 ATP5G1P05496 136 aa18.9■□□□□ 0.62
MSX1-201ENST00000382723 RHOHQ15669 191 aa18.9■□□□□ 0.62
MSX1-201ENST00000382723 K7EMI3 77 aa18.9■□□□□ 0.62
MSX1-201ENST00000382723 HTN3P15516 51 aa18.9■□□□□ 0.62
MSX1-201ENST00000382723 PRADC1Q9BSG0 188 aa18.9■□□□□ 0.62
MSX1-201ENST00000382723 KRTDAPP60985 99 aa18.89■□□□□ 0.61
MSX1-201ENST00000382723 TSHBP01222 138 aa18.88■□□□□ 0.61
MSX1-201ENST00000382723 C12orf74Q32Q52 190 aa18.88■□□□□ 0.61
MSX1-201ENST00000382723 ZMAT4Q9H898 229 aa18.88■□□□□ 0.61
MSX1-201ENST00000382723 CRYBA4P53673 196 aa18.87■□□□□ 0.61
MSX1-201ENST00000382723 PRO0255Q9UI72 69 aa18.87■□□□□ 0.61
MSX1-201ENST00000382723 TENM3Q9P273 2699 aa18.87■□□□□ 0.61
MSX1-201ENST00000382723 F5H768 121 aa18.86■□□□□ 0.61
MSX1-201ENST00000382723 HSPB8Q9UJY1 196 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms