RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ZNF56Q15929 161 aa15.84■□□□□ 0.13
TRIM54-202ENST00000380075 ZNF124Q15973 351 aa15.84■□□□□ 0.13
TRIM54-202ENST00000380075 FAM74A4Q5TZK3 123 aa15.84■□□□□ 0.13
TRIM54-202ENST00000380075 ZFP2Q6ZN57 461 aa15.84■□□□□ 0.13
TRIM54-202ENST00000380075 TRPT1Q86TN4 253 aaKnown RBP15.84■□□□□ 0.13
TRIM54-202ENST00000380075 TRAV25A0A0B4J276 109 aa15.83■□□□□ 0.12
TRIM54-202ENST00000380075 M0QY20 66 aa15.83■□□□□ 0.12
TRIM54-202ENST00000380075 PTTG1IPP53801 180 aa15.83■□□□□ 0.12
TRIM54-202ENST00000380075 ZNF876PQ49A33 203 aa15.83■□□□□ 0.12
TRIM54-202ENST00000380075 PIK3CD-AS1Q5SR53 167 aa15.83■□□□□ 0.12
TRIM54-202ENST00000380075 DUX3Q96PT4 197 aa15.83■□□□□ 0.12
TRIM54-202ENST00000380075 TENM1Q9UKZ4 2725 aa15.83■□□□□ 0.12
TRIM54-202ENST00000380075 PROK1P58294 105 aa15.82■□□□□ 0.12
TRIM54-202ENST00000380075 MAP6D1Q9H9H5 199 aa15.82■□□□□ 0.12
TRIM54-202ENST00000380075 TMEM141Q96I45 108 aa15.82■□□□□ 0.12
TRIM54-202ENST00000380075 CLUHP3Q96NS8 147 aa15.82■□□□□ 0.12
TRIM54-202ENST00000380075 EDA2RQ9HAV5 297 aa15.82■□□□□ 0.12
TRIM54-202ENST00000380075 TIMM17AQ99595 171 aa15.81■□□□□ 0.12
TRIM54-202ENST00000380075 LINC00467Q9BRT7 94 aa15.81■□□□□ 0.12
TRIM54-202ENST00000380075 RBMY1A1P0DJD3 496 aaKnown RBP15.8■□□□□ 0.12
TRIM54-202ENST00000380075 RBMY1CP0DJD4 496 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 FHL3Q13643 280 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 RBMY1FQ15415 496 aaKnown RBP15.8■□□□□ 0.12
TRIM54-202ENST00000380075 KRTAP21-3Q3LHN1 58 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 NEGR1Q7Z3B1 354 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 PTH2Q96A98 100 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 RHOHQ15669 191 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 VAMP3Q15836 100 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 PAPPA-AS1Q5QFB9 102 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 TP53TG1Q9Y2A0 90 aa15.8■□□□□ 0.12
TRIM54-202ENST00000380075 RBMY1BA6NDE4 496 aaKnown RBP15.79■□□□□ 0.12
TRIM54-202ENST00000380075 RBMY1EA6NEQ0 496 aaKnown RBP15.79■□□□□ 0.12
TRIM54-202ENST00000380075 PRSS29PA6NIE9 313 aa15.79■□□□□ 0.12
TRIM54-202ENST00000380075 IGIPA6NJ69 53 aa15.79■□□□□ 0.12
TRIM54-202ENST00000380075 H3BRM9 83 aa15.79■□□□□ 0.12
TRIM54-202ENST00000380075 RBMY1DP0C7P1 496 aaKnown RBP15.79■□□□□ 0.12
TRIM54-202ENST00000380075 RAX2Q96IS3 184 aa15.79■□□□□ 0.12
TRIM54-202ENST00000380075 TRBV25-1A0A075B6N4 114 aa15.78■□□□□ 0.12
TRIM54-202ENST00000380075 CCL25O15444 150 aa15.78■□□□□ 0.12
TRIM54-202ENST00000380075 CD300EQ496F6 205 aaPredicted RBP15.78■□□□□ 0.12
TRIM54-202ENST00000380075 CHAC1Q9BUX1 264 aa15.78■□□□□ 0.12
TRIM54-202ENST00000380075 KRTAP10-3P60369 221 aa15.78■□□□□ 0.12
TRIM54-202ENST00000380075 ZNF415Q09FC8 603 aa15.78■□□□□ 0.12
TRIM54-202ENST00000380075 NSUN5P1Q3KNT7 163 aa15.78■□□□□ 0.12
TRIM54-202ENST00000380075 MORN3Q6PF18 240 aaPredicted RBP15.78■□□□□ 0.12
TRIM54-202ENST00000380075 HIST2H2BDQ6DRA6 164 aa15.76■□□□□ 0.11
TRIM54-202ENST00000380075 A8MWV9 139 aa15.76■□□□□ 0.11
TRIM54-202ENST00000380075 M0R2P5 195 aa15.76■□□□□ 0.11
TRIM54-202ENST00000380075 PMVKQ15126 192 aa15.76■□□□□ 0.11
TRIM54-202ENST00000380075 TAL2Q16559 108 aa15.76■□□□□ 0.11
TRIM54-202ENST00000380075 C11orf44Q8N8P7 122 aa15.76■□□□□ 0.11
TRIM54-202ENST00000380075 OR11H12B2RN74 326 aa15.75■□□□□ 0.11
TRIM54-202ENST00000380075 CCL24O00175 119 aa15.75■□□□□ 0.11
TRIM54-202ENST00000380075 OR11H2Q8NH07 326 aa15.75■□□□□ 0.11
TRIM54-202ENST00000380075 STAB1Q9NY15 2570 aa15.75■□□□□ 0.11
TRIM54-202ENST00000380075 E9PLD3 99 aa15.75■□□□□ 0.11
TRIM54-202ENST00000380075 TTTY13Q9BZ97 58 aa15.75■□□□□ 0.11
TRIM54-202ENST00000380075 AGRNO00468 2067 aa15.74■□□□□ 0.11
TRIM54-202ENST00000380075 TRAV8-6A0A0B4J262 113 aa15.74■□□□□ 0.11
TRIM54-202ENST00000380075 INSP01308 110 aa15.74■□□□□ 0.11
TRIM54-202ENST00000380075 TSSC4Q9Y5U2 329 aaPredicted RBP15.74■□□□□ 0.11
TRIM54-202ENST00000380075 I3L3M4 83 aa15.73■□□□□ 0.11
TRIM54-202ENST00000380075 TSHBP01222 138 aa15.73■□□□□ 0.11
TRIM54-202ENST00000380075 C3orf56Q8N813 242 aa15.73■□□□□ 0.11
TRIM54-202ENST00000380075 C9orf118A6NHY6 69 aa15.73■□□□□ 0.11
TRIM54-202ENST00000380075 SPXQ9BT56 116 aa15.73■□□□□ 0.11
TRIM54-202ENST00000380075 ANK2Q01484 3957 aa15.72■□□□□ 0.11
TRIM54-202ENST00000380075 CD28P10747 220 aa15.72■□□□□ 0.11
TRIM54-202ENST00000380075 MAPKAPK5-AS1Q8N8E1 139 aa15.72■□□□□ 0.11
TRIM54-202ENST00000380075 TM2D2Q9BX73 214 aa15.72■□□□□ 0.11
TRIM54-202ENST00000380075 HTN1P15515 57 aa15.71■□□□□ 0.11
TRIM54-202ENST00000380075 RPL39P62891 51 aaKnown RBP15.71■□□□□ 0.11
TRIM54-202ENST00000380075 OR4C5Q8NGB2 326 aa15.71■□□□□ 0.11
TRIM54-202ENST00000380075 CST9LQ9H4G1 147 aa15.71■□□□□ 0.11
TRIM54-202ENST00000380075 MYMXA0A1B0GTQ4 84 aa15.71■□□□□ 0.1
TRIM54-202ENST00000380075 LINC01587Q99440 93 aa15.71■□□□□ 0.1
TRIM54-202ENST00000380075 GCSHP23434 173 aa15.7■□□□□ 0.1
TRIM54-202ENST00000380075 UFSP1Q6NVU6 142 aa15.7■□□□□ 0.1
TRIM54-202ENST00000380075 CEND1Q8N111 149 aa15.7■□□□□ 0.1
TRIM54-202ENST00000380075 RHODO00212 210 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 CMC4P56277 68 aaPredicted RBP15.69■□□□□ 0.1
TRIM54-202ENST00000380075 HERVK_113P61574 105 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 ODF3L2Q3SX64 289 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 AMMECR1LQ6DCA0 310 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 CITED1Q99966 193 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 IGLV4-69A0A075B6H9 119 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 A0A1W2PRX2 142 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 C20orf203Q8NBC4 194 aa15.69■□□□□ 0.1
TRIM54-202ENST00000380075 SMIM13P0DJ93 91 aa15.68■□□□□ 0.1
TRIM54-202ENST00000380075 STHQ8IWL8 128 aa15.68■□□□□ 0.1
TRIM54-202ENST00000380075 C11orf72Q8NBR9 251 aa15.68■□□□□ 0.1
TRIM54-202ENST00000380075 CITED2Q99967 270 aaPredicted RBP15.68■□□□□ 0.1
TRIM54-202ENST00000380075 PRADC1Q9BSG0 188 aa15.68■□□□□ 0.1
TRIM54-202ENST00000380075 DNHD1Q96M86 4753 aa15.67■□□□□ 0.1
TRIM54-202ENST00000380075 BEAN1Q3B7T3 259 aa15.67■□□□□ 0.1
TRIM54-202ENST00000380075 C11orf86A6NJI1 115 aa15.66■□□□□ 0.1
TRIM54-202ENST00000380075 P0DMU3 169 aa15.66■□□□□ 0.1
TRIM54-202ENST00000380075 FAM231AP0DMU4 169 aa15.66■□□□□ 0.1
TRIM54-202ENST00000380075 FAM231CP0DMU5 169 aa15.66■□□□□ 0.1
TRIM54-202ENST00000380075 FXYD2P54710 66 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms