RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 LRCOL1A6NCL2 159 aa13.99□□□□□ -0.17
SHANK1-202ENST00000359082 LINC00269Q8N2A0 174 aa13.98□□□□□ -0.17
SHANK1-202ENST00000359082 C11orf45Q8TAV5 145 aa13.98□□□□□ -0.17
SHANK1-202ENST00000359082 PRO0255Q9UI72 69 aa13.98□□□□□ -0.17
SHANK1-202ENST00000359082 A0A0J9YX75 114 aa13.98□□□□□ -0.17
SHANK1-202ENST00000359082 GVINP1Q7Z2Y8 2422 aa13.98□□□□□ -0.17
SHANK1-202ENST00000359082 PTH2Q96A98 100 aa13.98□□□□□ -0.17
SHANK1-202ENST00000359082 UPK3BQ9BT76 320 aa13.98□□□□□ -0.17
SHANK1-202ENST00000359082 TRAV23DV6A0A075B6W5 121 aa13.97□□□□□ -0.17
SHANK1-202ENST00000359082 A6NDX4 124 aa13.97□□□□□ -0.17
SHANK1-202ENST00000359082 DAZAP2Q15038 168 aaPredicted RBP13.97□□□□□ -0.17
SHANK1-202ENST00000359082 CACNA1BQ00975 2339 aa13.97□□□□□ -0.17
SHANK1-202ENST00000359082 A0A096LNI7 61 aa13.96□□□□□ -0.17
SHANK1-202ENST00000359082 TMEM89A2RUT3 159 aa13.96□□□□□ -0.17
SHANK1-202ENST00000359082 MIAQ16674 131 aa13.96□□□□□ -0.17
SHANK1-202ENST00000359082 C20orf203Q8NBC4 194 aa13.96□□□□□ -0.17
SHANK1-202ENST00000359082 HIGD2AQ9BW72 106 aa13.96□□□□□ -0.18
SHANK1-202ENST00000359082 BRK1Q8WUW1 75 aa13.96□□□□□ -0.18
SHANK1-202ENST00000359082 ZFAND2AQ8N6M9 145 aa13.95□□□□□ -0.18
SHANK1-202ENST00000359082 TCL1BO95988 128 aa13.95□□□□□ -0.18
SHANK1-202ENST00000359082 NDUFA11Q86Y39 141 aa13.95□□□□□ -0.18
SHANK1-202ENST00000359082 H3BT86 120 aa13.95□□□□□ -0.18
SHANK1-202ENST00000359082 IGLV1-47P01700 117 aa13.95□□□□□ -0.18
SHANK1-202ENST00000359082 REG3AQ06141 175 aa13.95□□□□□ -0.18
SHANK1-202ENST00000359082 ACACAQ13085 2346 aa13.94□□□□□ -0.18
SHANK1-202ENST00000359082 Q6ZSR3 168 aa13.94□□□□□ -0.18
SHANK1-202ENST00000359082 CASC2Q6XLA1 102 aa13.94□□□□□ -0.18
SHANK1-202ENST00000359082 NCOR1O75376 2440 aa13.93□□□□□ -0.18
SHANK1-202ENST00000359082 LOXL1Q08397 574 aaPredicted RBP13.93□□□□□ -0.18
SHANK1-202ENST00000359082 Q6ZTI0 123 aa13.93□□□□□ -0.18
SHANK1-202ENST00000359082 DOCK7Q96N67 2140 aa13.93□□□□□ -0.18
SHANK1-202ENST00000359082 FAM19A1Q7Z5A9 133 aa13.93□□□□□ -0.18
SHANK1-202ENST00000359082 CCDC140Q96MF4 163 aa13.93□□□□□ -0.18
SHANK1-202ENST00000359082 ZNF80P51504 273 aaPredicted RBP13.92□□□□□ -0.18
SHANK1-202ENST00000359082 BPY2O14599 106 aa13.92□□□□□ -0.18
SHANK1-202ENST00000359082 SPTBN2O15020 2390 aa13.92□□□□□ -0.18
SHANK1-202ENST00000359082 SCXQ7RTU7 201 aa13.91□□□□□ -0.18
SHANK1-202ENST00000359082 C19orf71A6NCJ1 209 aa13.91□□□□□ -0.18
SHANK1-202ENST00000359082 ROS1P08922 2347 aa13.91□□□□□ -0.18
SHANK1-202ENST00000359082 A0A0J9YXY3 114 aa13.91□□□□□ -0.18
SHANK1-202ENST00000359082 SPTSSBQ8NFR3 76 aa13.91□□□□□ -0.18
SHANK1-202ENST00000359082 TNRC6AQ8NDV7 1962 aaKnown RBP13.91□□□□□ -0.18
SHANK1-202ENST00000359082 CRYGDP07320 174 aa13.91□□□□□ -0.18
SHANK1-202ENST00000359082 C14orf177Q52M58 125 aa13.91□□□□□ -0.18
SHANK1-202ENST00000359082 LINC01548A6NM66 108 aa13.9□□□□□ -0.18
SHANK1-202ENST00000359082 MPLKIPQ8TAP9 179 aa13.9□□□□□ -0.18
SHANK1-202ENST00000359082 INSL3P51460 131 aa13.9□□□□□ -0.18
SHANK1-202ENST00000359082 WNK2Q9Y3S1 2297 aa13.9□□□□□ -0.18
SHANK1-202ENST00000359082 SLPIP03973 132 aa13.89□□□□□ -0.19
SHANK1-202ENST00000359082 PLA2G5P39877 138 aa13.89□□□□□ -0.19
SHANK1-202ENST00000359082 LINC00467Q9BRT7 94 aa13.89□□□□□ -0.19
SHANK1-202ENST00000359082 CHCHD10Q8WYQ3 142 aaPredicted RBP13.89□□□□□ -0.19
SHANK1-202ENST00000359082 COL6A6A6NMZ7 2263 aa13.89□□□□□ -0.19
SHANK1-202ENST00000359082 UFSP1Q6NVU6 142 aa13.89□□□□□ -0.19
SHANK1-202ENST00000359082 SDIM1Q6ZPB5 146 aa13.88□□□□□ -0.19
SHANK1-202ENST00000359082 A0A087WZ39 114 aa13.88□□□□□ -0.19
SHANK1-202ENST00000359082 IGKV1D-37A0A075B6S9 117 aa13.88□□□□□ -0.19
SHANK1-202ENST00000359082 WISP2O76076 250 aa13.88□□□□□ -0.19
SHANK1-202ENST00000359082 MSMPQ1L6U9 139 aa13.88□□□□□ -0.19
SHANK1-202ENST00000359082 FAM222AQ5U5X8 452 aa13.88□□□□□ -0.19
SHANK1-202ENST00000359082 KIF26AQ9ULI4 1882 aaPredicted RBP13.87□□□□□ -0.19
SHANK1-202ENST00000359082 TRBV10-1A0A0K0K1A3 114 aa13.87□□□□□ -0.19
SHANK1-202ENST00000359082 A0A1W2PNU3 283 aaPredicted RBP13.87□□□□□ -0.19
SHANK1-202ENST00000359082 FAM19A5Q7Z5A7 132 aaPredicted RBP13.87□□□□□ -0.19
SHANK1-202ENST00000359082 PDE6GP18545 87 aa13.87□□□□□ -0.19
SHANK1-202ENST00000359082 LINC00643Q86TS7 51 aa13.86□□□□□ -0.19
SHANK1-202ENST00000359082 ZNF407Q9C0G0 2248 aa13.86□□□□□ -0.19
SHANK1-202ENST00000359082 HIST2H2BDQ6DRA6 164 aa13.86□□□□□ -0.19
SHANK1-202ENST00000359082 C20orf173Q96LM9 149 aa13.86□□□□□ -0.19
SHANK1-202ENST00000359082 PKDREJQ9NTG1 2253 aa13.85□□□□□ -0.19
SHANK1-202ENST00000359082 WFDC10BQ8IUB3 73 aa13.85□□□□□ -0.19
SHANK1-202ENST00000359082 IL17DQ8TAD2 202 aa13.85□□□□□ -0.19
SHANK1-202ENST00000359082 DENND4CQ5VZ89 1909 aa13.85□□□□□ -0.19
SHANK1-202ENST00000359082 SPATA12Q7Z6I5 190 aa13.85□□□□□ -0.19
SHANK1-202ENST00000359082 CHD3Q12873 2000 aaKnown RBP13.85□□□□□ -0.19
SHANK1-202ENST00000359082 LINC00322Q6ZN03 302 aaPredicted RBP13.85□□□□□ -0.19
SHANK1-202ENST00000359082 NOTCH4Q99466 2003 aa13.84□□□□□ -0.19
SHANK1-202ENST00000359082 TEX49A0A1B0GTD5 131 aa13.83□□□□□ -0.2
SHANK1-202ENST00000359082 MLST8Q9BVC4 326 aa13.83□□□□□ -0.2
SHANK1-202ENST00000359082 DEFB131BA0A096LNP1 70 aa13.83□□□□□ -0.2
SHANK1-202ENST00000359082 USP17L23D6RBM5 183 aa13.83□□□□□ -0.2
SHANK1-202ENST00000359082 OBSL1O75147 1896 aa13.83□□□□□ -0.2
SHANK1-202ENST00000359082 DCANP1Q8TF63 244 aa13.83□□□□□ -0.2
SHANK1-202ENST00000359082 USF3Q68DE3 2245 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.82□□□□□ -0.2
SHANK1-202ENST00000359082 NDUFV3P56181 108 aaKnown RBP13.82□□□□□ -0.2
SHANK1-202ENST00000359082 LYPD6Q86Y78 171 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 ODF3BA8MYP8 253 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 HILS1P60008 231 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 ENHOQ6UWT2 76 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 NEXN-AS1Q8NBZ9 246 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 A0A0J9YWU9 116 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 C19orf84I3L1E1 186 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 TNFRSF13BO14836 293 aaPredicted RBP13.82□□□□□ -0.2
SHANK1-202ENST00000359082 IGHV4-31P0DP07 118 aa13.82□□□□□ -0.2
SHANK1-202ENST00000359082 IGF1P05019 195 aa13.81□□□□□ -0.2
SHANK1-202ENST00000359082 Q6YL49 198 aa13.81□□□□□ -0.2
SHANK1-202ENST00000359082 PLXNB3Q9ULL4 1909 aa13.81□□□□□ -0.2
SHANK1-202ENST00000359082 GDF5OSQ5U4N7 250 aa13.81□□□□□ -0.2
SHANK1-202ENST00000359082 TMEM223A0PJW6 202 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms