RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NHP2Q9NX24 153 aaKnown RBP11.33□□□□□ -0.6
UPF3B-202ENST00000345865 A0A1W2PPM0 123 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 P0DMU3 169 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 FAM231AP0DMU4 169 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 FAM231CP0DMU5 169 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 CST9LQ9H4G1 147 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 WNK1Q9H4A3 2382 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 TRGV11A0A075B6L2 103 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 Q6ZSV7 163 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 KLHL30-AS1Q8NEE0 82 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 NACAE9PAV3 2078 aa11.32□□□□□ -0.6
UPF3B-202ENST00000345865 NIPBLQ6KC79 2804 aaeCLIP11.32□□□□□ -0.6
UPF3B-202ENST00000345865 TRBV7-3A0A075B6L6 115 aa11.31□□□□□ -0.6
UPF3B-202ENST00000345865 K7EP34 96 aa11.31□□□□□ -0.6
UPF3B-202ENST00000345865 PROK1P58294 105 aa11.31□□□□□ -0.6
UPF3B-202ENST00000345865 PMVKQ15126 192 aa11.31□□□□□ -0.6
UPF3B-202ENST00000345865 TIMM17AQ99595 171 aa11.31□□□□□ -0.6
UPF3B-202ENST00000345865 OPRPNQ99935 248 aaPredicted RBP11.31□□□□□ -0.6
UPF3B-202ENST00000345865 PEMTQ9UBM1 199 aa11.31□□□□□ -0.6
UPF3B-202ENST00000345865 PDZD2O15018 2839 aa11.31□□□□□ -0.6
UPF3B-202ENST00000345865 CD300EQ496F6 205 aaPredicted RBP11.31□□□□□ -0.6
UPF3B-202ENST00000345865 TRPT1Q86TN4 253 aaKnown RBP11.31□□□□□ -0.6
UPF3B-202ENST00000345865 IGHV3-73A0A0B4J1V6 119 aa11.3□□□□□ -0.6
UPF3B-202ENST00000345865 HIST1H4GQ99525 98 aa11.3□□□□□ -0.6
UPF3B-202ENST00000345865 MAP6D1Q9H9H5 199 aa11.3□□□□□ -0.6
UPF3B-202ENST00000345865 DEFB114Q30KQ6 69 aa11.3□□□□□ -0.6
UPF3B-202ENST00000345865 SAMD5Q5TGI4 173 aa11.3□□□□□ -0.6
UPF3B-202ENST00000345865 ZNRF2Q8NHG8 242 aa11.3□□□□□ -0.6
UPF3B-202ENST00000345865 TMEM141Q96I45 108 aa11.3□□□□□ -0.6
UPF3B-202ENST00000345865 TAL2Q16559 108 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 GTF2H5Q6ZYL4 71 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 C11orf44Q8N8P7 122 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 PLEKHB2Q96CS7 222 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 Q9UF83 564 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 SETD2Q9BYW2 2564 aaPredicted RBP11.29□□□□□ -0.6
UPF3B-202ENST00000345865 TRAV2A0A0B4J234 112 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 DNAJC9-AS1A6NH13 148 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 LINC01549A6NIU2 74 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 NSUN5P1Q3KNT7 163 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 ESM1Q9NQ30 184 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 ACANP16112 2415 aa11.29□□□□□ -0.6
UPF3B-202ENST00000345865 SPCS1Q9Y6A9 102 aa11.28□□□□□ -0.6
UPF3B-202ENST00000345865 ZNF815PA8K554 130 aa11.27□□□□□ -0.6
UPF3B-202ENST00000345865 DYNLRB2Q8TF09 96 aa11.27□□□□□ -0.6
UPF3B-202ENST00000345865 SPAG8Q99932 426 aaPredicted RBP11.27□□□□□ -0.6
UPF3B-202ENST00000345865 RHOHQ15669 191 aa11.27□□□□□ -0.61
UPF3B-202ENST00000345865 C12orf74Q32Q52 190 aa11.27□□□□□ -0.61
UPF3B-202ENST00000345865 OCIAD2Q56VL3 154 aa11.27□□□□□ -0.61
UPF3B-202ENST00000345865 TMEM86BQ8N661 226 aa11.27□□□□□ -0.61
UPF3B-202ENST00000345865 RAX2Q96IS3 184 aa11.27□□□□□ -0.61
UPF3B-202ENST00000345865 ITPR2Q14571 2701 aa11.26□□□□□ -0.61
UPF3B-202ENST00000345865 I3L3M4 83 aa11.26□□□□□ -0.61
UPF3B-202ENST00000345865 Q6ZSN1 163 aa11.26□□□□□ -0.61
UPF3B-202ENST00000345865 C20orf203Q8NBC4 194 aa11.26□□□□□ -0.61
UPF3B-202ENST00000345865 FABP2P12104 132 aa11.26□□□□□ -0.61
UPF3B-202ENST00000345865 TSPEAR-AS2P59090 65 aa11.26□□□□□ -0.61
UPF3B-202ENST00000345865 A0A1W2PRX2 142 aa11.25□□□□□ -0.61
UPF3B-202ENST00000345865 IGLL5B9A064 214 aa11.25□□□□□ -0.61
UPF3B-202ENST00000345865 M0R2P5 195 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 PAPPA-AS1Q5QFB9 102 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 TMEM170BQ5T4T1 132 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 C11orf72Q8NBR9 251 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 ODF3L2Q3SX64 289 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 FAM104AQ969W3 186 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 EDA2RQ9HAV5 297 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 CBY1Q9Y3M2 126 aa11.24□□□□□ -0.61
UPF3B-202ENST00000345865 CD28P10747 220 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 LINC01587Q99440 93 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 MTORP42345 2549 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 A0A1B0GWB2 263 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 SAP30O75446 220 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 KRTAP1-1Q07627 177 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 SCGB2A2Q13296 93 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 RNF151Q2KHN1 245 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 SCGB1D4Q6XE38 83 aa11.23□□□□□ -0.61
UPF3B-202ENST00000345865 IGLV4-3A0A075B6K6 122 aa11.22□□□□□ -0.61
UPF3B-202ENST00000345865 FHL3Q13643 280 aa11.22□□□□□ -0.61
UPF3B-202ENST00000345865 CFAP126Q5VTH2 177 aa11.22□□□□□ -0.61
UPF3B-202ENST00000345865 NFE4Q86UQ8 179 aa11.22□□□□□ -0.61
UPF3B-202ENST00000345865 OR5A1Q8NGJ0 315 aa11.22□□□□□ -0.61
UPF3B-202ENST00000345865 A8MWV9 139 aa11.21□□□□□ -0.61
UPF3B-202ENST00000345865 HERVK_113P61574 105 aa11.21□□□□□ -0.61
UPF3B-202ENST00000345865 ZNF415Q09FC8 603 aa11.21□□□□□ -0.61
UPF3B-202ENST00000345865 AMELXQ99217 191 aa11.21□□□□□ -0.61
UPF3B-202ENST00000345865 SETXQ7Z333 2677 aaKnown RBP11.21□□□□□ -0.61
UPF3B-202ENST00000345865 A0A0J9YY99 117 aa11.21□□□□□ -0.62
UPF3B-202ENST00000345865 AZU1P20160 251 aa11.21□□□□□ -0.62
UPF3B-202ENST00000345865 MRPL16Q9NX20 251 aaKnown RBP11.21□□□□□ -0.62
UPF3B-202ENST00000345865 XCL2Q9UBD3 114 aa11.21□□□□□ -0.62
UPF3B-202ENST00000345865 CEMP1Q6PRD7 247 aaPredicted RBP11.2□□□□□ -0.62
UPF3B-202ENST00000345865 ZNF479Q96JC4 524 aa11.2□□□□□ -0.62
UPF3B-202ENST00000345865 CCL24O00175 119 aa11.2□□□□□ -0.62
UPF3B-202ENST00000345865 A0A0J9YXV3 536 aa11.19□□□□□ -0.62
UPF3B-202ENST00000345865 CITED2Q99967 270 aaPredicted RBP11.19□□□□□ -0.62
UPF3B-202ENST00000345865 LINC00467Q9BRT7 94 aa11.19□□□□□ -0.62
UPF3B-202ENST00000345865 JMJD1CQ15652 2540 aa11.19□□□□□ -0.62
UPF3B-202ENST00000345865 INSP01308 110 aa11.19□□□□□ -0.62
UPF3B-202ENST00000345865 PIK3CD-AS1Q5SR53 167 aa11.19□□□□□ -0.62
UPF3B-202ENST00000345865 TNFRSF18Q9Y5U5 241 aa11.19□□□□□ -0.62
UPF3B-202ENST00000345865 TMEM223A0PJW6 202 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms