RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TM2D2Q9BX73 214 aa14.27□□□□□ -0.12
COL9A3-201ENST00000343916 J3QKU1 62 aa14.27□□□□□ -0.13
COL9A3-201ENST00000343916 EMP1P54849 157 aa14.27□□□□□ -0.13
COL9A3-201ENST00000343916 WNK1Q9H4A3 2382 aa14.27□□□□□ -0.13
COL9A3-201ENST00000343916 FLNAP21333 2647 aaKnown RBP14.27□□□□□ -0.13
COL9A3-201ENST00000343916 VCYO14598 125 aa14.26□□□□□ -0.13
COL9A3-201ENST00000343916 DLX4Q92988 240 aaPredicted RBP14.26□□□□□ -0.13
COL9A3-201ENST00000343916 M0QY20 66 aa14.26□□□□□ -0.13
COL9A3-201ENST00000343916 AKAP9Q99996 3911 aa14.26□□□□□ -0.13
COL9A3-201ENST00000343916 RPL32P62910 135 aaKnown RBP14.25□□□□□ -0.13
COL9A3-201ENST00000343916 KLHL30-AS1Q8NEE0 82 aa14.25□□□□□ -0.13
COL9A3-201ENST00000343916 RBMY1BA6NDE4 496 aaKnown RBP14.24□□□□□ -0.13
COL9A3-201ENST00000343916 RBMY1EA6NEQ0 496 aaKnown RBP14.24□□□□□ -0.13
COL9A3-201ENST00000343916 IGIPA6NJ69 53 aa14.24□□□□□ -0.13
COL9A3-201ENST00000343916 RBMY1DP0C7P1 496 aaKnown RBP14.24□□□□□ -0.13
COL9A3-201ENST00000343916 C4orf3Q8WVX3 66 aa14.24□□□□□ -0.13
COL9A3-201ENST00000343916 TRBV27A0A0K0K1C4 114 aa14.24□□□□□ -0.13
COL9A3-201ENST00000343916 IGLL5B9A064 214 aa14.24□□□□□ -0.13
COL9A3-201ENST00000343916 C11orf44Q8N8P7 122 aa14.24□□□□□ -0.13
COL9A3-201ENST00000343916 OR11H12B2RN74 326 aa14.23□□□□□ -0.13
COL9A3-201ENST00000343916 OR11H2Q8NH07 326 aa14.23□□□□□ -0.13
COL9A3-201ENST00000343916 HIST1H4GQ99525 98 aa14.23□□□□□ -0.13
COL9A3-201ENST00000343916 SETD2Q9BYW2 2564 aaPredicted RBP14.23□□□□□ -0.13
COL9A3-201ENST00000343916 E9PLD3 99 aa14.23□□□□□ -0.13
COL9A3-201ENST00000343916 H3BMM0 161 aa14.23□□□□□ -0.13
COL9A3-201ENST00000343916 ZNF479Q96JC4 524 aa14.23□□□□□ -0.13
COL9A3-201ENST00000343916 IGHV3-73A0A0B4J1V6 119 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 WFDC2Q14508 124 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 C12orf74Q32Q52 190 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 PEMTQ9UBM1 199 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 TRBV6-5A0A0K0K1A5 114 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 Q6ZSV7 163 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 MTURNQ8N3F0 131 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 ACANP16112 2415 aa14.22□□□□□ -0.13
COL9A3-201ENST00000343916 TRGV11A0A075B6L2 103 aa14.21□□□□□ -0.13
COL9A3-201ENST00000343916 H3BMG7 143 aa14.21□□□□□ -0.13
COL9A3-201ENST00000343916 PRADC1Q9BSG0 188 aa14.21□□□□□ -0.13
COL9A3-201ENST00000343916 IGLV4-69A0A075B6H9 119 aa14.21□□□□□ -0.13
COL9A3-201ENST00000343916 C11orf86A6NJI1 115 aa14.21□□□□□ -0.13
COL9A3-201ENST00000343916 DYNLRB2Q8TF09 96 aa14.21□□□□□ -0.13
COL9A3-201ENST00000343916 MYMXA0A1B0GTQ4 84 aa14.2□□□□□ -0.14
COL9A3-201ENST00000343916 CD300EQ496F6 205 aaPredicted RBP14.2□□□□□ -0.14
COL9A3-201ENST00000343916 PROK1P58294 105 aa14.2□□□□□ -0.14
COL9A3-201ENST00000343916 OPRPNQ99935 248 aaPredicted RBP14.2□□□□□ -0.14
COL9A3-201ENST00000343916 MAP6D1Q9H9H5 199 aa14.19□□□□□ -0.14
COL9A3-201ENST00000343916 A0A1W2PRX2 142 aa14.19□□□□□ -0.14
COL9A3-201ENST00000343916 DNAJC9-AS1A6NH13 148 aa14.19□□□□□ -0.14
COL9A3-201ENST00000343916 P0DMU3 169 aa14.19□□□□□ -0.14
COL9A3-201ENST00000343916 FAM231AP0DMU4 169 aa14.19□□□□□ -0.14
COL9A3-201ENST00000343916 FAM231CP0DMU5 169 aa14.19□□□□□ -0.14
COL9A3-201ENST00000343916 PMVKQ15126 192 aa14.19□□□□□ -0.14
COL9A3-201ENST00000343916 TRPT1Q86TN4 253 aaKnown RBP14.19□□□□□ -0.14
COL9A3-201ENST00000343916 TAL2Q16559 108 aa14.18□□□□□ -0.14
COL9A3-201ENST00000343916 DEFB114Q30KQ6 69 aa14.18□□□□□ -0.14
COL9A3-201ENST00000343916 SH2D6Q7Z4S9 175 aa14.18□□□□□ -0.14
COL9A3-201ENST00000343916 TIMM17AQ99595 171 aa14.17□□□□□ -0.14
COL9A3-201ENST00000343916 GTSF1LQ9H1H1 148 aa14.17□□□□□ -0.14
COL9A3-201ENST00000343916 ESM1Q9NQ30 184 aa14.17□□□□□ -0.14
COL9A3-201ENST00000343916 SPANXB1Q9NS25 103 aaPredicted RBP14.17□□□□□ -0.14
COL9A3-201ENST00000343916 TRBV7-3A0A075B6L6 115 aa14.17□□□□□ -0.14
COL9A3-201ENST00000343916 TMEM141Q96I45 108 aa14.16□□□□□ -0.14
COL9A3-201ENST00000343916 ZNF815PA8K554 130 aa14.16□□□□□ -0.14
COL9A3-201ENST00000343916 A8MTW9 85 aa14.16□□□□□ -0.14
COL9A3-201ENST00000343916 ETDBQ3ZM63 59 aa14.16□□□□□ -0.14
COL9A3-201ENST00000343916 TSSC4Q9Y5U2 329 aaPredicted RBP14.16□□□□□ -0.14
COL9A3-201ENST00000343916 MTORP42345 2549 aa14.16□□□□□ -0.14
COL9A3-201ENST00000343916 F8W1H4 67 aa14.15□□□□□ -0.14
COL9A3-201ENST00000343916 ZNRF2Q8NHG8 242 aa14.15□□□□□ -0.14
COL9A3-201ENST00000343916 Q9UF83 564 aa14.15□□□□□ -0.14
COL9A3-201ENST00000343916 RAX2Q96IS3 184 aa14.15□□□□□ -0.14
COL9A3-201ENST00000343916 LINC01549A6NIU2 74 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 AZU1P20160 251 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 SCGB2A2Q13296 93 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 RRN3P1Q2M238 152 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 NSUN5P1Q3KNT7 163 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 PLEKHB2Q96CS7 222 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 NACAE9PAV3 2078 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 TMEM170BQ5T4T1 132 aa14.14□□□□□ -0.15
COL9A3-201ENST00000343916 PDZD2O15018 2839 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 GCN1Q92616 2671 aaKnown RBP14.13□□□□□ -0.15
COL9A3-201ENST00000343916 TRAV2A0A0B4J234 112 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 I3L3M4 83 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 TMEM86BQ8N661 226 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 SPAG8Q99932 426 aaPredicted RBP14.13□□□□□ -0.15
COL9A3-201ENST00000343916 SMAGPQ0VAQ4 97 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 SCGB1D4Q6XE38 83 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 LINC01587Q99440 93 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 NOTCH3Q9UM47 2321 aa14.13□□□□□ -0.15
COL9A3-201ENST00000343916 NIPBLQ6KC79 2804 aaeCLIP14.12□□□□□ -0.15
COL9A3-201ENST00000343916 RHOHQ15669 191 aa14.12□□□□□ -0.15
COL9A3-201ENST00000343916 C20orf203Q8NBC4 194 aa14.12□□□□□ -0.15
COL9A3-201ENST00000343916 ITPR2Q14571 2701 aa14.11□□□□□ -0.15
COL9A3-201ENST00000343916 M0R2P5 195 aa14.11□□□□□ -0.15
COL9A3-201ENST00000343916 CD28P10747 220 aa14.11□□□□□ -0.15
COL9A3-201ENST00000343916 GAGE13Q4V321 117 aa14.11□□□□□ -0.15
COL9A3-201ENST00000343916 Q6ZSN1 163 aa14.11□□□□□ -0.15
COL9A3-201ENST00000343916 PAPPA-AS1Q5QFB9 102 aa14.1□□□□□ -0.15
COL9A3-201ENST00000343916 GAGE12HA6NDE8 117 aa14.1□□□□□ -0.15
COL9A3-201ENST00000343916 TSPEAR-AS2P59090 65 aa14.1□□□□□ -0.15
COL9A3-201ENST00000343916 ODF3L2Q3SX64 289 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms