RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NRGNQ92686 78 aa16.67■□□□□ 0.26
TRIM28-202ENST00000341753 ELANEP08246 267 aa16.66■□□□□ 0.26
TRIM28-202ENST00000341753 ZNF56Q15929 161 aa16.66■□□□□ 0.26
TRIM28-202ENST00000341753 APRG1Q8IVJ8 170 aa16.66■□□□□ 0.26
TRIM28-202ENST00000341753 TRAV12-2A0A075B6T6 113 aa16.66■□□□□ 0.26
TRIM28-202ENST00000341753 BEX4Q9NWD9 120 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-202ENST00000341753 MDFICQ9P1T7 246 aa16.65■□□□□ 0.26
TRIM28-202ENST00000341753 MUSTN1Q8IVN3 82 aa16.65■□□□□ 0.26
TRIM28-202ENST00000341753 ZANQ9Y493 2812 aa16.64■□□□□ 0.26
TRIM28-202ENST00000341753 ADARB2-AS1A8MUL3 147 aa16.64■□□□□ 0.25
TRIM28-202ENST00000341753 CCL19Q99731 98 aa16.64■□□□□ 0.25
TRIM28-202ENST00000341753 DOPEY1Q5JWR5 2465 aa16.64■□□□□ 0.25
TRIM28-202ENST00000341753 KLLNB2CW77 178 aa16.63■□□□□ 0.25
TRIM28-202ENST00000341753 Q1RN00 199 aa16.63■□□□□ 0.25
TRIM28-202ENST00000341753 IGHV3-33P01772 117 aa16.63■□□□□ 0.25
TRIM28-202ENST00000341753 USP9YO00507 2555 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-202ENST00000341753 IGHV4-30-2A0A087WSY4 118 aa16.62■□□□□ 0.25
TRIM28-202ENST00000341753 TRBV27A0A0K0K1C4 114 aa16.62■□□□□ 0.25
TRIM28-202ENST00000341753 RPL32P62910 135 aaKnown RBP16.62■□□□□ 0.25
TRIM28-202ENST00000341753 IGHV1-69P01742 117 aa16.62■□□□□ 0.25
TRIM28-202ENST00000341753 TMEM263Q8WUH6 116 aaKnown RBP16.62■□□□□ 0.25
TRIM28-202ENST00000341753 A0A0J9YXV3 536 aa16.61■□□□□ 0.25
TRIM28-202ENST00000341753 BLCAPP62952 87 aa16.61■□□□□ 0.25
TRIM28-202ENST00000341753 ANAPC13Q9BS18 74 aa16.61■□□□□ 0.25
TRIM28-202ENST00000341753 ERG28Q9UKR5 140 aa16.61■□□□□ 0.25
TRIM28-202ENST00000341753 TMEM223A0PJW6 202 aa16.61■□□□□ 0.25
TRIM28-202ENST00000341753 FAM208BQ5VWN6 2430 aa16.61■□□□□ 0.25
TRIM28-202ENST00000341753 P0DMU3 169 aa16.6■□□□□ 0.25
TRIM28-202ENST00000341753 FAM231AP0DMU4 169 aa16.6■□□□□ 0.25
TRIM28-202ENST00000341753 FAM231CP0DMU5 169 aa16.6■□□□□ 0.25
TRIM28-202ENST00000341753 ATP5J2P56134 94 aa16.6■□□□□ 0.25
TRIM28-202ENST00000341753 NTN5Q8WTR8 489 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-202ENST00000341753 ZNF22P17026 224 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-202ENST00000341753 PIMREGQ9BSJ6 248 aa16.59■□□□□ 0.25
TRIM28-202ENST00000341753 SORL1Q92673 2214 aa16.59■□□□□ 0.25
TRIM28-202ENST00000341753 LGALS9O00182 355 aa16.59■□□□□ 0.25
TRIM28-202ENST00000341753 LEPROTO15243 131 aa16.59■□□□□ 0.25
TRIM28-202ENST00000341753 M0QY20 66 aa16.58■□□□□ 0.25
TRIM28-202ENST00000341753 ZFAND6Q6FIF0 208 aa16.58■□□□□ 0.25
TRIM28-202ENST00000341753 DAZ1Q9NQZ3 744 aaKnown RBP16.58■□□□□ 0.24
TRIM28-202ENST00000341753 H3BUX3 64 aa16.57■□□□□ 0.24
TRIM28-202ENST00000341753 TEX29Q8N6K0 151 aa16.57■□□□□ 0.24
TRIM28-202ENST00000341753 C10orf105Q8TEF2 133 aa16.57■□□□□ 0.24
TRIM28-202ENST00000341753 VCX2Q9H322 139 aa16.57■□□□□ 0.24
TRIM28-202ENST00000341753 RHODO00212 210 aa16.57■□□□□ 0.24
TRIM28-202ENST00000341753 IGHV3-16A0A0C4DH30 117 aa16.56■□□□□ 0.24
TRIM28-202ENST00000341753 Q8N1Y9 231 aa16.56■□□□□ 0.24
TRIM28-202ENST00000341753 SPXQ9BT56 116 aa16.56■□□□□ 0.24
TRIM28-202ENST00000341753 FBN2P35556 2912 aa16.56■□□□□ 0.24
TRIM28-202ENST00000341753 CRLF1O75462 422 aa16.56■□□□□ 0.24
TRIM28-202ENST00000341753 RNASE13Q5GAN3 156 aaKnown RBP16.56■□□□□ 0.24
TRIM28-202ENST00000341753 SS18L2Q9UHA2 77 aa16.55■□□□□ 0.24
TRIM28-202ENST00000341753 TRBV7-9A0A0J9YWB2 115 aa16.55■□□□□ 0.24
TRIM28-202ENST00000341753 TRBV6-5A0A0K0K1A5 114 aa16.55■□□□□ 0.24
TRIM28-202ENST00000341753 AVPP01185 164 aa16.55■□□□□ 0.24
TRIM28-202ENST00000341753 TEX49A0A1B0GTD5 131 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 NPC2P61916 151 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 TMEM95Q3KNT9 176 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 DCANP1Q8TF63 244 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 USMG5Q96IX5 58 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 IGHV3-73A0A0B4J1V6 119 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 TMEM262E9PQX1 116 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 CEMP1Q6PRD7 247 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-202ENST00000341753 DOPEY2Q9Y3R5 2298 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 TRAV4A0A0B4J268 109 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 PRSS2P07478 247 aa16.54■□□□□ 0.24
TRIM28-202ENST00000341753 TRAV8-3A0A0A6YYJ7 113 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 SPINK13Q1W4C9 94 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 C20orf203Q8NBC4 194 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 C9orf85Q96MD7 179 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 LRRK2Q5S007 2527 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 IGLV4-3A0A075B6K6 122 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 A0A0J9YXY3 114 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 NSUN5P1Q3KNT7 163 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 LINC01620Q4KN68 170 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 Q6ZSV7 163 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 MAPK1IP1LQ8NDC0 245 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 CITED1Q99966 193 aa16.53■□□□□ 0.24
TRIM28-202ENST00000341753 ZNF462Q96JM2 2506 aa16.52■□□□□ 0.24
TRIM28-202ENST00000341753 A0A0B4J2C4 111 aa16.52■□□□□ 0.24
TRIM28-202ENST00000341753 PRB1P04280 392 aa16.52■□□□□ 0.24
TRIM28-202ENST00000341753 ID1P41134 155 aa16.52■□□□□ 0.24
TRIM28-202ENST00000341753 TRIAP1O43715 76 aa16.51■□□□□ 0.23
TRIM28-202ENST00000341753 IGHG2P01859 326 aa16.51■□□□□ 0.23
TRIM28-202ENST00000341753 HTN1P15515 57 aa16.51■□□□□ 0.23
TRIM28-202ENST00000341753 A8MZ25 164 aa16.5■□□□□ 0.23
TRIM28-202ENST00000341753 M0R2P5 195 aa16.5■□□□□ 0.23
TRIM28-202ENST00000341753 RHOHQ15669 191 aa16.5■□□□□ 0.23
TRIM28-202ENST00000341753 IGHV3-30-3P0DP02 117 aa16.5■□□□□ 0.23
TRIM28-202ENST00000341753 ATXN8Q156A1 80 aa16.5■□□□□ 0.23
TRIM28-202ENST00000341753 NHLRC4P0CG21 123 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-202ENST00000341753 B5MCH6 92 aa16.49■□□□□ 0.23
TRIM28-202ENST00000341753 SNCGO76070 127 aa16.49■□□□□ 0.23
TRIM28-202ENST00000341753 PROK1P58294 105 aa16.48■□□□□ 0.23
TRIM28-202ENST00000341753 I3L3M4 83 aa16.48■□□□□ 0.23
TRIM28-202ENST00000341753 ADAMTSL4-AS1Q5T5F5 129 aa16.48■□□□□ 0.23
TRIM28-202ENST00000341753 C10orf99Q6UWK7 81 aa16.48■□□□□ 0.23
TRIM28-202ENST00000341753 ANKRD17O75179 2603 aaKnown RBP16.48■□□□□ 0.23
TRIM28-202ENST00000341753 MSMBP08118 114 aa16.47■□□□□ 0.23
TRIM28-202ENST00000341753 GAGE2BQ13066 116 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms