RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ZNF25P17030 456 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-203ENST00000341423 CCL20P78556 96 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 COL5A1P20908 1838 aaPredicted RBP6.24□□□□□ -1.41
HMGB1-203ENST00000341423 RBAKDNA6NC62 111 aa6.24□□□□□ -1.41
HMGB1-203ENST00000341423 K7EIM0 57 aa6.24□□□□□ -1.41
HMGB1-203ENST00000341423 SLC17A3O00476 420 aa6.24□□□□□ -1.41
HMGB1-203ENST00000341423 TMEM14CQ9P0S9 112 aa6.24□□□□□ -1.41
HMGB1-203ENST00000341423 PCDH15Q96QU1 1955 aa6.24□□□□□ -1.41
HMGB1-203ENST00000341423 NYNRINQ9P2P1 1898 aaKnown RBP6.24□□□□□ -1.41
HMGB1-203ENST00000341423 M0R143 59 aa6.24□□□□□ -1.41
HMGB1-203ENST00000341423 C19orf71A6NCJ1 209 aa6.24□□□□□ -1.41
HMGB1-203ENST00000341423 C9JQL5 133 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 PAX2Q02962 417 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 MTURNQ8N3F0 131 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 SLC25A29Q8N8R3 303 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 IGLV4-69A0A075B6H9 119 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 SCO2A0A1W2PP80 73 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 LY6LH3BQJ8 138 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 ATP5L2Q7Z4Y8 100 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 VAMP8Q9BV40 100 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 GOLGB1Q14789 3259 aaKnown RBP6.23□□□□□ -1.41
HMGB1-203ENST00000341423 DKK2Q9UBU2 259 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 COL4A3Q01955 1670 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 EGFEM1PQ0D2K5 195 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 UFSP1Q6NVU6 142 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 PARLQ9H300 379 aa6.23□□□□□ -1.41
HMGB1-203ENST00000341423 LINC01559Q495D7 138 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 SPANXA1Q9NS26 97 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-203ENST00000341423 IGKV2-29A2NJV5 120 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-203ENST00000341423 SPINK6Q6UWN8 80 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 SMDT1Q9H4I9 107 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 ANAPC1Q9H1A4 1944 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 TRBV6-4A0A1B0GX49 114 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 BEAN1Q3B7T3 259 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 hADV29S1A0JD25 119 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 FOXI1Q12951 378 aa6.22□□□□□ -1.41
HMGB1-203ENST00000341423 CHCHD10Q8WYQ3 142 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-203ENST00000341423 GTF2H5Q6ZYL4 71 aa6.21□□□□□ -1.41
HMGB1-203ENST00000341423 NPC2P61916 151 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 DNLZQ5SXM8 178 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 TMEM141Q96I45 108 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 DMBT1Q9UGM3 2413 aaPredicted RBP6.21□□□□□ -1.42
HMGB1-203ENST00000341423 CFAP46Q8IYW2 2715 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 IGLV1-40P01703 118 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 CASC10Q5T4H9 136 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 ZNF581Q9P0T4 197 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 TRBV9A0A0B4J1U6 114 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 ALPK3Q96L96 1907 aa6.21□□□□□ -1.42
HMGB1-203ENST00000341423 MUC4Q99102 2169 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 I3L2K1 104 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 Q86TA4 180 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 ZNF524Q96C55 264 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 ODF3Q96PU9 254 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 MGST2Q99735 147 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 LIMD2Q9BT23 127 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 WIPF1O43516 503 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 MED14OSP0DP75 135 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 PDZD11Q5EBL8 140 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 Q6ZPA2 131 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 FAM24BQ8N5W8 94 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 CDPF1Q6NVV7 123 aa6.2□□□□□ -1.42
HMGB1-203ENST00000341423 Q6ZS46 218 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 FAM19A2Q8N3H0 131 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 LAMTOR2Q9Y2Q5 125 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 PLXNA2O75051 1894 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 RTL8CO15255 209 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 CHAC1Q9BUX1 264 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 ZNF124Q15973 351 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 CIRBP-AS1Q8TBR5 109 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 IZUMO1RA6ND01 250 aa6.19□□□□□ -1.42
HMGB1-203ENST00000341423 DPM2O94777 84 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 STAG3L3P0CL85 134 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 GAGE2AQ6NT46 116 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 SMR3BP02814 79 aaPredicted RBP6.18□□□□□ -1.42
HMGB1-203ENST00000341423 TMEM170AQ8WVE7 144 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 LCE6AA0A183 80 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 PGPEP1LA6NFU8 196 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 H0Y9J4 135 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 CLLU1Q5K131 121 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 ARTNQ5T4W7 220 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 LINC00476Q8WZB0 136 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 RITA1Q96K30 269 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 CEP192Q8TEP8 1941 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 PCP4L1A6NKN8 68 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 VSIRQ9H7M9 311 aa6.18□□□□□ -1.42
HMGB1-203ENST00000341423 USP17L23D6RBM5 183 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 NCKAP5O14513 1909 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 ODF3L2Q3SX64 289 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 Q6ZSR3 168 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 LINC00614P0C842 121 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 M0R2T5 61 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 C1QBP02746 253 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 Q8N2B8 174 aa6.17□□□□□ -1.42
HMGB1-203ENST00000341423 OSTCQ9NRP0 149 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 TMEM14EPQ6UXP3 125 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 C2orf66Q6UXQ4 117 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 CASC2Q6XLA1 102 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 Q6ZRP5 223 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 H3BQ15 152 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms