RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 C12orf54Q6X4T0 127 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 STHQ8IWL8 128 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 LINC00482Q8N8I6 264 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 BAALCQ8WXS3 180 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 MAP1LC3AQ9H492 121 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 TRGV11A0A075B6L2 103 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 MDFICQ9P1T7 246 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 C14orf178Q8N769 122 aaPredicted RBP10.47□□□□□ -0.73
C9orf3-202ENST00000297979 C2CD3Q4AC94 2353 aa10.47□□□□□ -0.73
C9orf3-202ENST00000297979 C3orf79P0CE67 100 aa10.47□□□□□ -0.73
C9orf3-202ENST00000297979 GATA1P15976 413 aaPredicted RBP10.47□□□□□ -0.73
C9orf3-202ENST00000297979 MUC4Q99102 2169 aa10.46□□□□□ -0.73
C9orf3-202ENST00000297979 TRAV26-2A0A0B4J265 109 aa10.46□□□□□ -0.73
C9orf3-202ENST00000297979 TRPT1Q86TN4 253 aaKnown RBP10.46□□□□□ -0.74
C9orf3-202ENST00000297979 V9GYY9 64 aa10.46□□□□□ -0.74
C9orf3-202ENST00000297979 LEPROTL1O95214 131 aa10.45□□□□□ -0.74
C9orf3-202ENST00000297979 INSP01308 110 aa10.45□□□□□ -0.74
C9orf3-202ENST00000297979 BEAN1Q3B7T3 259 aa10.45□□□□□ -0.74
C9orf3-202ENST00000297979 SYT8Q8NBV8 401 aa10.45□□□□□ -0.74
C9orf3-202ENST00000297979 NRACQ8N912 160 aa10.45□□□□□ -0.74
C9orf3-202ENST00000297979 MGPP08493 103 aa10.44□□□□□ -0.74
C9orf3-202ENST00000297979 NXT2Q9NPJ8 142 aaKnown RBP10.44□□□□□ -0.74
C9orf3-202ENST00000297979 MRPS16Q9Y3D3 137 aaKnown RBP10.44□□□□□ -0.74
C9orf3-202ENST00000297979 C4orf48Q5BLP8 95 aa10.44□□□□□ -0.74
C9orf3-202ENST00000297979 Q8N976 141 aa10.44□□□□□ -0.74
C9orf3-202ENST00000297979 GAGE10A6NGK3 116 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 HTN1P15515 57 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 KIF25-AS1Q9Y6Z4 181 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 UFSP1Q6NVU6 142 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 POM121L12Q8N7R1 296 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 LINC00467Q9BRT7 94 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 TRAV8-6A0A0B4J262 113 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 IGLC3P0DOY3 106 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 DEFB125Q8N687 156 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 DNAJC30Q96LL9 226 aa10.43□□□□□ -0.74
C9orf3-202ENST00000297979 F8P00451 2351 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 FLNBO75369 2602 aaKnown RBP10.42□□□□□ -0.74
C9orf3-202ENST00000297979 TEX48A0A1B0GUV7 120 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 LINC01546A6NGU7 62 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 LINC00173Q6ZV60 143 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 LINC01587Q99440 93 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 TMEM70Q9BUB7 260 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 JPT2Q9H910 190 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 C19orf73Q9NVV2 129 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 XCL2Q9UBD3 114 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 GAGE12JA6NER3 117 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 GAGE7O76087 117 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 GAGE12FP0CL80 117 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 GAGE12GP0CL81 117 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 GAGE12IP0CL82 117 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 GAGE4Q13068 117 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 Q8N8P6 123 aa10.42□□□□□ -0.74
C9orf3-202ENST00000297979 A0A096LNJ9 63 aa10.41□□□□□ -0.74
C9orf3-202ENST00000297979 A8MZ25 164 aa10.41□□□□□ -0.74
C9orf3-202ENST00000297979 LINC00315P59091 139 aa10.41□□□□□ -0.74
C9orf3-202ENST00000297979 RPL24P83731 157 aaKnown RBP10.41□□□□□ -0.74
C9orf3-202ENST00000297979 FAM19A5Q7Z5A7 132 aaPredicted RBP10.41□□□□□ -0.74
C9orf3-202ENST00000297979 ZNF415Q09FC8 603 aa10.41□□□□□ -0.74
C9orf3-202ENST00000297979 RASL10AQ92737 203 aa10.41□□□□□ -0.74
C9orf3-202ENST00000297979 WFDC10AQ9H1F0 79 aa10.41□□□□□ -0.74
C9orf3-202ENST00000297979 IGLV2-18A0A075B6J9 118 aa10.4□□□□□ -0.74
C9orf3-202ENST00000297979 A0A087WWL8 130 aa10.4□□□□□ -0.74
C9orf3-202ENST00000297979 TINCRA0A1B0GVN0 87 aa10.4□□□□□ -0.74
C9orf3-202ENST00000297979 HBDP02042 147 aa10.4□□□□□ -0.74
C9orf3-202ENST00000297979 ZNF876PQ49A33 203 aa10.4□□□□□ -0.74
C9orf3-202ENST00000297979 INSL3P51460 131 aa10.4□□□□□ -0.74
C9orf3-202ENST00000297979 CCDC179H3BU77 68 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 PPP1R17O96001 155 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 SPATA45Q537H7 98 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 SYS1-DBNDD2H3BUS1 97 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 PRM2P04554 102 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 RPL39LQ96EH5 51 aaKnown RBP10.39□□□□□ -0.75
C9orf3-202ENST00000297979 C20orf78Q9BR46 151 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 ZNF747Q9BV97 191 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 LOC107984640A0A0U1RRK4 108 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 SUMO2P61956 95 aaKnown RBP10.39□□□□□ -0.75
C9orf3-202ENST00000297979 C9orf66Q5T8R8 295 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 FAM74A4Q5TZK3 123 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 SMIM2Q9BVW6 85 aa10.39□□□□□ -0.75
C9orf3-202ENST00000297979 SPINK8P0C7L1 97 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 TCTAP57738 103 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 SUMO4Q6EEV6 95 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 C1orf158Q8N1D5 194 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 F5H697 171 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 CRYGDP07320 174 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 NHLRC4P0CG21 123 aaPredicted RBP10.38□□□□□ -0.75
C9orf3-202ENST00000297979 SPATA12Q7Z6I5 190 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 C11orf72Q8NBR9 251 aa10.38□□□□□ -0.75
C9orf3-202ENST00000297979 M0R2P5 195 aa10.37□□□□□ -0.75
C9orf3-202ENST00000297979 SPATA3Q8NHX4 192 aa10.37□□□□□ -0.75
C9orf3-202ENST00000297979 FCER1GP30273 86 aa10.37□□□□□ -0.75
C9orf3-202ENST00000297979 RPL35AP18077 110 aaKnown RBP10.36□□□□□ -0.75
C9orf3-202ENST00000297979 ZNF56Q15929 161 aa10.36□□□□□ -0.75
C9orf3-202ENST00000297979 C6orf226Q5I0X4 101 aa10.36□□□□□ -0.75
C9orf3-202ENST00000297979 PIK3CD-AS1Q5SR53 167 aa10.36□□□□□ -0.75
C9orf3-202ENST00000297979 IGHV3OR16-12A0A075B7B8 117 aa10.36□□□□□ -0.75
C9orf3-202ENST00000297979 LAGE3Q14657 143 aa10.36□□□□□ -0.75
C9orf3-202ENST00000297979 OR13C6PQ8NH95 151 aa10.36□□□□□ -0.75
C9orf3-202ENST00000297979 GIG44P09565 113 aaPredicted RBP10.35□□□□□ -0.75
C9orf3-202ENST00000297979 MORN3Q6PF18 240 aaPredicted RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms