RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PEMTQ9UBM1 199 aa14.75□□□□□ -0.05
VPS53-201ENST00000291074 TRBV6-5A0A0K0K1A5 114 aa14.75□□□□□ -0.05
VPS53-201ENST00000291074 TRBV27A0A0K0K1C4 114 aa14.75□□□□□ -0.05
VPS53-201ENST00000291074 TRGV11A0A075B6L2 103 aa14.74□□□□□ -0.05
VPS53-201ENST00000291074 OR11H12B2RN74 326 aa14.74□□□□□ -0.05
VPS53-201ENST00000291074 OR11H2Q8NH07 326 aa14.74□□□□□ -0.05
VPS53-201ENST00000291074 DYNLRB2Q8TF09 96 aa14.74□□□□□ -0.05
VPS53-201ENST00000291074 DNAJC9-AS1A6NH13 148 aa14.74□□□□□ -0.05
VPS53-201ENST00000291074 IGHV3-73A0A0B4J1V6 119 aa14.73□□□□□ -0.05
VPS53-201ENST00000291074 CEND1Q8N111 149 aa14.73□□□□□ -0.05
VPS53-201ENST00000291074 MAP6D1Q9H9H5 199 aa14.73□□□□□ -0.05
VPS53-201ENST00000291074 IGLV4-69A0A075B6H9 119 aa14.72□□□□□ -0.05
VPS53-201ENST00000291074 PRADC1Q9BSG0 188 aa14.72□□□□□ -0.05
VPS53-201ENST00000291074 NACAE9PAV3 2078 aa14.72□□□□□ -0.05
VPS53-201ENST00000291074 C11orf86A6NJI1 115 aa14.72□□□□□ -0.05
VPS53-201ENST00000291074 A0A1W2PRX2 142 aa14.71□□□□□ -0.05
VPS53-201ENST00000291074 GAGE10A6NGK3 116 aa14.71□□□□□ -0.05
VPS53-201ENST00000291074 ESM1Q9NQ30 184 aa14.71□□□□□ -0.05
VPS53-201ENST00000291074 NHP2Q9NX24 153 aaKnown RBP14.71□□□□□ -0.05
VPS53-201ENST00000291074 PROK1P58294 105 aa14.71□□□□□ -0.05
VPS53-201ENST00000291074 CD300EQ496F6 205 aaPredicted RBP14.71□□□□□ -0.05
VPS53-201ENST00000291074 TRPT1Q86TN4 253 aaKnown RBP14.71□□□□□ -0.05
VPS53-201ENST00000291074 PDZD2O15018 2839 aa14.71□□□□□ -0.05
VPS53-201ENST00000291074 A8MTW9 85 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 SMIM13P0DJ93 91 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 DEFB114Q30KQ6 69 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 OPRPNQ99935 248 aaPredicted RBP14.7□□□□□ -0.06
VPS53-201ENST00000291074 TM2D2Q9BX73 214 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 MYMXA0A1B0GTQ4 84 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 E9PLD3 99 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 P0DMU3 169 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 FAM231AP0DMU4 169 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 FAM231CP0DMU5 169 aa14.7□□□□□ -0.06
VPS53-201ENST00000291074 PMVKQ15126 192 aa14.69□□□□□ -0.06
VPS53-201ENST00000291074 ITPR2Q14571 2701 aa14.69□□□□□ -0.06
VPS53-201ENST00000291074 MTORP42345 2549 aa14.69□□□□□ -0.06
VPS53-201ENST00000291074 RAX2Q96IS3 184 aa14.69□□□□□ -0.06
VPS53-201ENST00000291074 TIMM17AQ99595 171 aa14.69□□□□□ -0.06
VPS53-201ENST00000291074 NIPBLQ6KC79 2804 aaeCLIP14.68□□□□□ -0.06
VPS53-201ENST00000291074 UFSP1Q6NVU6 142 aa14.68□□□□□ -0.06
VPS53-201ENST00000291074 TMEM86BQ8N661 226 aa14.68□□□□□ -0.06
VPS53-201ENST00000291074 HIST1H4GQ99525 98 aa14.68□□□□□ -0.06
VPS53-201ENST00000291074 A0A1W2PPM0 123 aa14.68□□□□□ -0.06
VPS53-201ENST00000291074 TMEM141Q96I45 108 aa14.68□□□□□ -0.06
VPS53-201ENST00000291074 TRAV2A0A0B4J234 112 aa14.67□□□□□ -0.06
VPS53-201ENST00000291074 PHLDA1Q8WV24 401 aaPredicted RBP14.67□□□□□ -0.06
VPS53-201ENST00000291074 K7EP34 96 aa14.66□□□□□ -0.06
VPS53-201ENST00000291074 NSUN5P1Q3KNT7 163 aa14.66□□□□□ -0.06
VPS53-201ENST00000291074 TRBV7-3A0A075B6L6 115 aa14.66□□□□□ -0.06
VPS53-201ENST00000291074 Q9UF83 564 aa14.66□□□□□ -0.06
VPS53-201ENST00000291074 ZNF815PA8K554 130 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 CD28P10747 220 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 ZNRF2Q8NHG8 242 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 PLEKHB2Q96CS7 222 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 LINC01549A6NIU2 74 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 CIDEAO60543 219 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 SAMD5Q5TGI4 173 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 GTF2H5Q6ZYL4 71 aa14.65□□□□□ -0.06
VPS53-201ENST00000291074 I3L3M4 83 aa14.64□□□□□ -0.07
VPS53-201ENST00000291074 RHOHQ15669 191 aa14.64□□□□□ -0.07
VPS53-201ENST00000291074 SPCS1Q9Y6A9 102 aa14.64□□□□□ -0.07
VPS53-201ENST00000291074 TAL2Q16559 108 aa14.64□□□□□ -0.07
VPS53-201ENST00000291074 LINC01587Q99440 93 aa14.64□□□□□ -0.07
VPS53-201ENST00000291074 SPAG8Q99932 426 aaPredicted RBP14.64□□□□□ -0.07
VPS53-201ENST00000291074 ODF3L2Q3SX64 289 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 TMEM170BQ5T4T1 132 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 C20orf203Q8NBC4 194 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 G3V4G9 280 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 M0R2P5 195 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 KRTAP1-1Q07627 177 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 SCGB2A2Q13296 93 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 Q6ZSN1 163 aa14.63□□□□□ -0.07
VPS53-201ENST00000291074 HELZ2Q9BYK8 2649 aaKnown RBP14.63□□□□□ -0.07
VPS53-201ENST00000291074 ZNF415Q09FC8 603 aa14.62□□□□□ -0.07
VPS53-201ENST00000291074 JMJD1CQ15652 2540 aa14.62□□□□□ -0.07
VPS53-201ENST00000291074 TSPEAR-AS2P59090 65 aa14.61□□□□□ -0.07
VPS53-201ENST00000291074 SCGB1D4Q6XE38 83 aa14.61□□□□□ -0.07
VPS53-201ENST00000291074 XCL2Q9UBD3 114 aa14.61□□□□□ -0.07
VPS53-201ENST00000291074 FABP2P12104 132 aa14.61□□□□□ -0.07
VPS53-201ENST00000291074 C12orf74Q32Q52 190 aa14.61□□□□□ -0.07
VPS53-201ENST00000291074 C11orf72Q8NBR9 251 aa14.61□□□□□ -0.07
VPS53-201ENST00000291074 MRPL16Q9NX20 251 aaKnown RBP14.61□□□□□ -0.07
VPS53-201ENST00000291074 SETXQ7Z333 2677 aaKnown RBP14.61□□□□□ -0.07
VPS53-201ENST00000291074 CCL24O00175 119 aa14.6□□□□□ -0.07
VPS53-201ENST00000291074 PAPPA-AS1Q5QFB9 102 aa14.6□□□□□ -0.07
VPS53-201ENST00000291074 CITED2Q99967 270 aaPredicted RBP14.6□□□□□ -0.07
VPS53-201ENST00000291074 NOTCH3Q9UM47 2321 aa14.6□□□□□ -0.07
VPS53-201ENST00000291074 HERVK_113P61574 105 aa14.59□□□□□ -0.07
VPS53-201ENST00000291074 FHL3Q13643 280 aa14.59□□□□□ -0.07
VPS53-201ENST00000291074 A8MWV9 139 aa14.59□□□□□ -0.07
VPS53-201ENST00000291074 INSP01308 110 aa14.59□□□□□ -0.07
VPS53-201ENST00000291074 YAE1D1Q9NRH1 226 aa14.59□□□□□ -0.07
VPS53-201ENST00000291074 ANK3Q12955 4377 aaKnown RBP14.59□□□□□ -0.07
VPS53-201ENST00000291074 CFAP126Q5VTH2 177 aa14.59□□□□□ -0.07
VPS53-201ENST00000291074 TEX29Q8N6K0 151 aa14.59□□□□□ -0.07
VPS53-201ENST00000291074 IGLV4-3A0A075B6K6 122 aa14.58□□□□□ -0.08
VPS53-201ENST00000291074 IGHV3OR16-12A0A075B7B8 117 aa14.58□□□□□ -0.08
VPS53-201ENST00000291074 AZU1P20160 251 aa14.58□□□□□ -0.08
VPS53-201ENST00000291074 IGLL5B9A064 214 aa14.57□□□□□ -0.08
VPS53-201ENST00000291074 CEMP1Q6PRD7 247 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms