RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 M0QY20 66 aa16.38■□□□□ 0.21
CDX1-201ENST00000231656 KRTAP10-11P60412 298 aa16.38■□□□□ 0.21
CDX1-201ENST00000231656 ZNF56Q15929 161 aa16.38■□□□□ 0.21
CDX1-201ENST00000231656 MRPL52Q86TS9 123 aaKnown RBP16.38■□□□□ 0.21
CDX1-201ENST00000231656 G3V4G9 280 aa16.38■□□□□ 0.21
CDX1-201ENST00000231656 M0R2P5 195 aa16.38■□□□□ 0.21
CDX1-201ENST00000231656 PIK3CD-AS1Q5SR53 167 aa16.38■□□□□ 0.21
CDX1-201ENST00000231656 MORN3Q6PF18 240 aaPredicted RBP16.38■□□□□ 0.21
CDX1-201ENST00000231656 Q6ZN92 141 aa16.38■□□□□ 0.21
CDX1-201ENST00000231656 C1orf158Q8N1D5 194 aa16.37■□□□□ 0.21
CDX1-201ENST00000231656 M0R143 59 aa16.36■□□□□ 0.21
CDX1-201ENST00000231656 ODF1Q14990 250 aa16.36■□□□□ 0.21
CDX1-201ENST00000231656 NEGR1Q7Z3B1 354 aa16.36■□□□□ 0.21
CDX1-201ENST00000231656 TOMM6Q96B49 74 aa16.36■□□□□ 0.21
CDX1-201ENST00000231656 DKK2Q9UBU2 259 aa16.36■□□□□ 0.21
CDX1-201ENST00000231656 LBHQ53QV2 105 aaPredicted RBP16.36■□□□□ 0.21
CDX1-201ENST00000231656 SAMD5Q5TGI4 173 aa16.36■□□□□ 0.21
CDX1-201ENST00000231656 C2orf88Q9BSF0 95 aa16.36■□□□□ 0.21
CDX1-201ENST00000231656 NOTCH1P46531 2555 aa16.35■□□□□ 0.21
CDX1-201ENST00000231656 NACAE9PAV3 2078 aa16.35■□□□□ 0.21
CDX1-201ENST00000231656 PRSS1P07477 247 aa16.35■□□□□ 0.21
CDX1-201ENST00000231656 GIG44P09565 113 aaPredicted RBP16.35■□□□□ 0.21
CDX1-201ENST00000231656 HNRNPA3P51991 378 aaKnown RBP16.35■□□□□ 0.21
CDX1-201ENST00000231656 ZMAT5Q9UDW3 170 aaKnown RBP16.35■□□□□ 0.21
CDX1-201ENST00000231656 VCYO14598 125 aa16.34■□□□□ 0.21
CDX1-201ENST00000231656 UFSP1Q6NVU6 142 aa16.34■□□□□ 0.21
CDX1-201ENST00000231656 ZMAT4Q9H898 229 aa16.34■□□□□ 0.21
CDX1-201ENST00000231656 MGAM2Q2M2H8 2515 aa16.34■□□□□ 0.21
CDX1-201ENST00000231656 SDHAF1A6NFY7 115 aa16.33■□□□□ 0.21
CDX1-201ENST00000231656 SPXQ9BT56 116 aa16.33■□□□□ 0.21
CDX1-201ENST00000231656 EDA2RQ9HAV5 297 aa16.33■□□□□ 0.21
CDX1-201ENST00000231656 NBEAL1Q6ZS30 2694 aa16.33■□□□□ 0.2
CDX1-201ENST00000231656 DNAH3Q8TD57 4116 aa16.33■□□□□ 0.2
CDX1-201ENST00000231656 TRBV27A0A0K0K1C4 114 aa16.33■□□□□ 0.2
CDX1-201ENST00000231656 A8MWV9 139 aa16.33■□□□□ 0.2
CDX1-201ENST00000231656 AZU1P20160 251 aa16.32■□□□□ 0.2
CDX1-201ENST00000231656 TMEM208Q9BTX3 173 aa16.32■□□□□ 0.2
CDX1-201ENST00000231656 ANKRD39Q53RE8 183 aa16.31■□□□□ 0.2
CDX1-201ENST00000231656 C2orf66Q6UXQ4 117 aa16.31■□□□□ 0.2
CDX1-201ENST00000231656 MRPS16Q9Y3D3 137 aaKnown RBP16.31■□□□□ 0.2
CDX1-201ENST00000231656 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.31■□□□□ 0.2
CDX1-201ENST00000231656 ZFP2Q6ZN57 461 aa16.31■□□□□ 0.2
CDX1-201ENST00000231656 IL17DQ8TAD2 202 aa16.31■□□□□ 0.2
CDX1-201ENST00000231656 SCGB3A1Q96QR1 104 aa16.31■□□□□ 0.2
CDX1-201ENST00000231656 TP73-AS1Q9UF72 201 aa16.31■□□□□ 0.2
CDX1-201ENST00000231656 C1QTNF4Q9BXJ3 329 aa16.3■□□□□ 0.2
CDX1-201ENST00000231656 CFAP126Q5VTH2 177 aa16.29■□□□□ 0.2
CDX1-201ENST00000231656 SLC25A34Q6PIV7 304 aa16.29■□□□□ 0.2
CDX1-201ENST00000231656 STPG4Q8N801 248 aa16.29■□□□□ 0.2
CDX1-201ENST00000231656 KIR2DL4Q99706 377 aa16.29■□□□□ 0.2
CDX1-201ENST00000231656 IGHV3OR16-12A0A075B7B8 117 aa16.28■□□□□ 0.2
CDX1-201ENST00000231656 IGHV4-30-4P0DP06 118 aa16.28■□□□□ 0.2
CDX1-201ENST00000231656 MRPL16Q9NX20 251 aaKnown RBP16.28■□□□□ 0.2
CDX1-201ENST00000231656 A0A087WX48 190 aa16.28■□□□□ 0.2
CDX1-201ENST00000231656 IGHV3-73A0A0B4J1V6 119 aa16.28■□□□□ 0.2
CDX1-201ENST00000231656 COX8AP10176 69 aa16.28■□□□□ 0.2
CDX1-201ENST00000231656 KRTAP21-3Q3LHN1 58 aa16.28■□□□□ 0.2
CDX1-201ENST00000231656 CSNK1G2-AS1Q8NCQ2 148 aa16.28■□□□□ 0.2
CDX1-201ENST00000231656 TRAV12-1A0A0B4J245 112 aa16.27■□□□□ 0.2
CDX1-201ENST00000231656 H7C1H1 209 aa16.27■□□□□ 0.2
CDX1-201ENST00000231656 G0S2P27469 103 aa16.27■□□□□ 0.2
CDX1-201ENST00000231656 RNASE8Q8TDE3 154 aaKnown RBP16.27■□□□□ 0.2
CDX1-201ENST00000231656 RS1O15537 224 aa16.26■□□□□ 0.19
CDX1-201ENST00000231656 DPM2O94777 84 aa16.26■□□□□ 0.19
CDX1-201ENST00000231656 IGKCP01834 107 aa16.26■□□□□ 0.19
CDX1-201ENST00000231656 ERASQ7Z444 233 aa16.26■□□□□ 0.19
CDX1-201ENST00000231656 MRPL35Q9NZE8 188 aaKnown RBP16.26■□□□□ 0.19
CDX1-201ENST00000231656 HHLA3Q9XRX5 114 aa16.26■□□□□ 0.19
CDX1-201ENST00000231656 CYSLTR1Q9Y271 337 aa16.26■□□□□ 0.19
CDX1-201ENST00000231656 RHODO00212 210 aa16.25■□□□□ 0.19
CDX1-201ENST00000231656 Q6ZSN1 163 aa16.25■□□□□ 0.19
CDX1-201ENST00000231656 NEXN-AS1Q8NBZ9 246 aa16.25■□□□□ 0.19
CDX1-201ENST00000231656 KIR2DL5BQ8NHK3 375 aa16.25■□□□□ 0.19
CDX1-201ENST00000231656 DEFB104AQ8WTQ1 72 aa16.25■□□□□ 0.19
CDX1-201ENST00000231656 LINC01549A6NIU2 74 aa16.24■□□□□ 0.19
CDX1-201ENST00000231656 TMEM263Q8WUH6 116 aaKnown RBP16.24■□□□□ 0.19
CDX1-201ENST00000231656 BAALCQ8WXS3 180 aa16.24■□□□□ 0.19
CDX1-201ENST00000231656 TP53TG1Q9Y2A0 90 aa16.24■□□□□ 0.19
CDX1-201ENST00000231656 TSHBP01222 138 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 P0DMU3 169 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 FAM231AP0DMU4 169 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 FAM231CP0DMU5 169 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 FGF6P10767 208 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 RHOHQ15669 191 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 IGIPA6NJ69 53 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 I3L3M4 83 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 APOC4P55056 127 aa16.23■□□□□ 0.19
CDX1-201ENST00000231656 NBEAL2Q6ZNJ1 2754 aa16.22■□□□□ 0.19
CDX1-201ENST00000231656 A0A1B0GV90 55 aa16.22■□□□□ 0.19
CDX1-201ENST00000231656 DNHD1Q96M86 4753 aa16.22■□□□□ 0.19
CDX1-201ENST00000231656 RPL39P62891 51 aaKnown RBP16.21■□□□□ 0.19
CDX1-201ENST00000231656 A8MZ25 164 aa16.21■□□□□ 0.18
CDX1-201ENST00000231656 F8VRH5 84 aa16.21■□□□□ 0.18
CDX1-201ENST00000231656 IGHV3-53P01767 116 aa16.21■□□□□ 0.18
CDX1-201ENST00000231656 BATFQ16520 125 aa16.21■□□□□ 0.18
CDX1-201ENST00000231656 PLNP26678 52 aa16.2■□□□□ 0.18
CDX1-201ENST00000231656 TCTAP57738 103 aa16.2■□□□□ 0.18
CDX1-201ENST00000231656 KPRPQ5T749 579 aaPredicted RBP16.2■□□□□ 0.18
CDX1-201ENST00000231656 CHTOPQ9Y3Y2 248 aaKnown RBP16.2■□□□□ 0.18
CDX1-201ENST00000231656 C2orf91Q6ZV80 131 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms