RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 C17orf58Q2M2W7 97 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 BRK1Q8WUW1 75 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 TMEM243Q9BU79 118 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 TRBV7-1A0A0A6YYK4 115 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 H3BRN7 92 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 NDUFC2O95298 119 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 INAFM2P0DMQ5 153 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 SLC50A1Q9BRV3 221 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 ATMQ13315 3056 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 TRAV12-2A0A075B6T6 113 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 NUP37Q8NFH4 326 aa5.2□□□□□ -1.58
SCN1A-213ENST00000636759 NDUFC2-KCTD14E9PQ53 114 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 IGLV1-44P01699 117 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 SEM1Q6ZVN7 128 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 LINC00311Q8N616 119 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 C9orf106Q8NAJ2 232 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 TIMM21Q9BVV7 248 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 ZNRD1Q9P1U0 126 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 RUSC1-AS1Q66K80 236 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 SDIM1Q6ZPB5 146 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 PRIMA1Q86XR5 153 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 IGHV3-64A0A075B6Q5 118 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 SRRM5B3KS81 715 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 EIF4EBP3O60516 100 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-213ENST00000636759 DNAL4O96015 105 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 MGPP08493 103 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 TMEM30BQ3MIR4 351 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 C16orf92Q96LL3 132 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 TPSG1Q9NRR2 321 aa5.19□□□□□ -1.58
SCN1A-213ENST00000636759 CGB1A6NKQ9 187 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 TMEM200BQ69YZ2 307 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 PVRIGQ6DKI7 326 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 COX8CQ7Z4L0 72 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 C20orf173Q96LM9 149 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 GPR179Q6PRD1 2367 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 IGKV3D-7A0A0C4DH55 119 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 USP17L23D6RBM5 183 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 LEPROTO15243 131 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 LHBP01229 141 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 HIST1H4AP62805 103 aaKnown RBP5.18□□□□□ -1.58
SCN1A-213ENST00000636759 COPS9Q8WXC6 57 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 LINC00574Q9H8X3 128 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 TP53TG1Q9Y2A0 90 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 SERP1Q9Y6X1 66 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 NBPF19A0A087WUL8 3843 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 IGHV1-69DA0A0B4J2H0 117 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 I3L3M4 83 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 PPP1R17O96001 155 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 DEFB109BQ30KR1 87 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 DAND5Q8N907 189 aa5.18□□□□□ -1.58
SCN1A-213ENST00000636759 IGLV4-69A0A075B6H9 119 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 DAZ2Q13117 558 aaKnown RBP5.17□□□□□ -1.58
SCN1A-213ENST00000636759 DAZ4Q86SG3 579 aaKnown RBP5.17□□□□□ -1.58
SCN1A-213ENST00000636759 DEFB108BQ8NET1 73 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 DAZ1Q9NQZ3 744 aaKnown RBP5.17□□□□□ -1.58
SCN1A-213ENST00000636759 DAZ3Q9NR90 486 aaKnown RBP5.17□□□□□ -1.58
SCN1A-213ENST00000636759 KNCNA6PVL3 124 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 LYZL6O75951 148 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 MRGPRG-AS1Q2M3A8 158 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 TMEM141Q96I45 108 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 AHCTF1Q8WYP5 2266 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 SMIM26A0A096LP01 95 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 IGKV1-17P01599 117 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 S100A4P26447 101 aaKnown RBP5.17□□□□□ -1.58
SCN1A-213ENST00000636759 FAM27E3Q08E93 113 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 FAM201AQ5SY85 155 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 ZNF833PQ6ZTB9 187 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 DCANP1Q8TF63 244 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 UPK3BQ9BT76 320 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 OTOGLQ3ZCN5 2332 aa5.17□□□□□ -1.58
SCN1A-213ENST00000636759 SDHAF1A6NFY7 115 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 M0R381 172 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 DYNAPQ8N1N2 210 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 SIRPDQ9H106 197 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 AKAP9Q99996 3911 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RBMY1BA6NDE4 496 aaKnown RBP5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RBMY1EA6NEQ0 496 aaKnown RBP5.16□□□□□ -1.58
SCN1A-213ENST00000636759 LY6LH3BQJ8 138 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 IGHG2P01859 326 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RBMY1DP0C7P1 496 aaKnown RBP5.16□□□□□ -1.58
SCN1A-213ENST00000636759 BAALC-AS2P0C853 105 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RBMY1A1P0DJD3 496 aaKnown RBP5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RBMY1CP0DJD4 496 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 PSMB8P28062 276 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RBMY1FQ15415 496 aaKnown RBP5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RPL39LQ96EH5 51 aaKnown RBP5.16□□□□□ -1.58
SCN1A-213ENST00000636759 FAM215AQ9Y5M1 114 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 SLC25A15Q9Y619 301 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 ZNF292O60281 2723 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 IGHV1-18A0A0C4DH31 117 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 M0R1W7 72 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 IGFL4Q6B9Z1 124 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 RNF182Q8N6D2 247 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 ZNF491Q8N8L2 437 aa5.16□□□□□ -1.58
SCN1A-213ENST00000636759 NACAE9PAV3 2078 aa5.15□□□□□ -1.58
SCN1A-213ENST00000636759 A0A0J9YXY3 114 aa5.15□□□□□ -1.58
SCN1A-213ENST00000636759 TIRAPP58753 221 aa5.15□□□□□ -1.58
SCN1A-213ENST00000636759 AMELXQ99217 191 aa5.15□□□□□ -1.58
SCN1A-213ENST00000636759 IGHV3-72A0A0B4J1Y9 119 aa5.15□□□□□ -1.59
SCN1A-213ENST00000636759 IGKV3D-20A0A0C4DH25 116 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms