RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 H7C1H1 209 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 NDUFA11Q86Y39 141 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 GAGE12BA1L429 117 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 GAGE7O76087 117 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 GAGE12FP0CL80 117 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 GAGE12GP0CL81 117 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 GAGE12IP0CL82 117 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 IGKV3OR2-268A0A0C4DH90 116 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 SYS1-DBNDD2H3BUS1 97 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 IFI27L1Q96BM0 104 aa11.69□□□□□ -0.54
CPSF1-213ENST00000620219 C1QTNF4Q9BXJ3 329 aa11.68□□□□□ -0.54
CPSF1-213ENST00000620219 TRGV4A0A0C4DH28 118 aa11.68□□□□□ -0.54
CPSF1-213ENST00000620219 PROK1P58294 105 aa11.68□□□□□ -0.54
CPSF1-213ENST00000620219 SUMO2P61956 95 aaKnown RBP11.68□□□□□ -0.54
CPSF1-213ENST00000620219 LAGE3Q14657 143 aa11.68□□□□□ -0.54
CPSF1-213ENST00000620219 NOP10Q9NPE3 64 aaKnown RBP11.68□□□□□ -0.54
CPSF1-213ENST00000620219 PPP1R17O96001 155 aa11.67□□□□□ -0.54
CPSF1-213ENST00000620219 MGAM2Q2M2H8 2515 aa11.67□□□□□ -0.54
CPSF1-213ENST00000620219 LINC00482Q8N8I6 264 aa11.67□□□□□ -0.54
CPSF1-213ENST00000620219 IGHV3-38A0A0C4DH36 116 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 TRAV25A0A0B4J276 109 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 AZU1P20160 251 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 ADAMTSL5Q6ZMM2 481 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 STAB1Q9NY15 2570 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 HINT1P49773 126 aaPredicted RBP11.66□□□□□ -0.54
CPSF1-213ENST00000620219 C9orf66Q5T8R8 295 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 URB1-AS1Q96HZ7 61 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 FOSL1P15407 271 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 ODF3L2Q3SX64 289 aa11.66□□□□□ -0.54
CPSF1-213ENST00000620219 SDHAF1A6NFY7 115 aa11.65□□□□□ -0.54
CPSF1-213ENST00000620219 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.65□□□□□ -0.54
CPSF1-213ENST00000620219 IGLL1P15814 213 aa11.65□□□□□ -0.54
CPSF1-213ENST00000620219 DEFB4AO15263 64 aa11.65□□□□□ -0.54
CPSF1-213ENST00000620219 KLK9Q2XQG4 91 aa11.65□□□□□ -0.54
CPSF1-213ENST00000620219 DEFB121Q5J5C9 76 aa11.65□□□□□ -0.54
CPSF1-213ENST00000620219 NDUFAF3Q9BU61 184 aa11.65□□□□□ -0.54
CPSF1-213ENST00000620219 TP73-AS1Q9UF72 201 aa11.65□□□□□ -0.54
CPSF1-213ENST00000620219 NDUFA7O95182 113 aa11.64□□□□□ -0.55
CPSF1-213ENST00000620219 ESDP10768 282 aa11.64□□□□□ -0.55
CPSF1-213ENST00000620219 RNF152Q8N8N0 203 aa11.64□□□□□ -0.55
CPSF1-213ENST00000620219 M0R143 59 aa11.64□□□□□ -0.55
CPSF1-213ENST00000620219 C16orf95Q9H693 158 aa11.64□□□□□ -0.55
CPSF1-213ENST00000620219 MRAP2Q96G30 205 aa11.64□□□□□ -0.55
CPSF1-213ENST00000620219 TRAV9-2A0A087WT02 112 aa11.63□□□□□ -0.55
CPSF1-213ENST00000620219 A0A1B0GV90 55 aa11.63□□□□□ -0.55
CPSF1-213ENST00000620219 AMMECR1LQ6DCA0 310 aa11.63□□□□□ -0.55
CPSF1-213ENST00000620219 NSD1Q96L73 2696 aaPredicted RBP11.63□□□□□ -0.55
CPSF1-213ENST00000620219 ORMDL2Q53FV1 153 aa11.63□□□□□ -0.55
CPSF1-213ENST00000620219 STPG4Q8N801 248 aa11.63□□□□□ -0.55
CPSF1-213ENST00000620219 UQCR10Q9UDW1 63 aa11.63□□□□□ -0.55
CPSF1-213ENST00000620219 CYSLTR1Q9Y271 337 aa11.63□□□□□ -0.55
CPSF1-213ENST00000620219 KLLNB2CW77 178 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 ATP5LO75964 103 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 RNASE3P12724 160 aaKnown RBP11.62□□□□□ -0.55
CPSF1-213ENST00000620219 G0S2P27469 103 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 ZNF493Q6ZR52 646 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 SMIM2Q9BVW6 85 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 M0R2P5 195 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 VCYO14598 125 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 DEFB135Q30KP9 77 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 SUMO4Q6EEV6 95 aa11.62□□□□□ -0.55
CPSF1-213ENST00000620219 MIEN1Q9BRT3 115 aa11.61□□□□□ -0.55
CPSF1-213ENST00000620219 TRAV8-6A0A0B4J262 113 aa11.61□□□□□ -0.55
CPSF1-213ENST00000620219 TEX43Q6ZNM6 134 aa11.61□□□□□ -0.55
CPSF1-213ENST00000620219 Q8N8P6 123 aa11.61□□□□□ -0.55
CPSF1-213ENST00000620219 EREGO14944 169 aa11.61□□□□□ -0.55
CPSF1-213ENST00000620219 RNF185Q96GF1 192 aa11.61□□□□□ -0.55
CPSF1-213ENST00000620219 GAGE12JA6NER3 117 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 GAGE1Q13065 139 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 GAGE4Q13068 117 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 GAGE5Q13069 117 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 GAGE13Q4V321 117 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 TMEM170BQ5T4T1 132 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 ZNF747Q9BV97 191 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 LAMTOR2Q9Y2Q5 125 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 TRBV7-9A0A0J9YWB2 115 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 A8MWV9 139 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 UBE2L6O14933 153 aa11.6□□□□□ -0.55
CPSF1-213ENST00000620219 P0DMU3 169 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 FAM231AP0DMU4 169 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 FAM231CP0DMU5 169 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 C2orf66Q6UXQ4 117 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 SPATA12Q7Z6I5 190 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 GATD1Q8NB37 220 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 NBEAL2Q6ZNJ1 2754 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 NOTCH1P46531 2555 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 TMEM262E9PQX1 116 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 PET117Q6UWS5 81 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 ZNRF2Q8NHG8 242 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 COTL1Q14019 142 aa11.59□□□□□ -0.55
CPSF1-213ENST00000620219 OXLD1Q5BKU9 147 aa11.58□□□□□ -0.55
CPSF1-213ENST00000620219 TP53TG1Q9Y2A0 90 aa11.58□□□□□ -0.55
CPSF1-213ENST00000620219 TRPT1Q86TN4 253 aaKnown RBP11.58□□□□□ -0.56
CPSF1-213ENST00000620219 SLC25A34Q6PIV7 304 aa11.58□□□□□ -0.56
CPSF1-213ENST00000620219 DKK2Q9UBU2 259 aa11.58□□□□□ -0.56
CPSF1-213ENST00000620219 SCGB1D4Q6XE38 83 aa11.57□□□□□ -0.56
CPSF1-213ENST00000620219 ERASQ7Z444 233 aa11.57□□□□□ -0.56
CPSF1-213ENST00000620219 A0A096LPF7 62 aa11.57□□□□□ -0.56
CPSF1-213ENST00000620219 RPL36AP83881 106 aaKnown RBP11.57□□□□□ -0.56
CPSF1-213ENST00000620219 RPL36ALQ969Q0 106 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms