RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 FUT5Q11128 374 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 PSMG4Q5JS54 123 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 MIC13Q5XKP0 118 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 SPATA12Q7Z6I5 190 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 AMN1Q8IY45 258 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 CLECL1Q8IZS7 167 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 ZNF563Q8TA94 476 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 SMIM7Q9BQ49 75 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 SND1-IT1Q9HBX3 110 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 HEATR5AQ86XA9 2040 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 POLEQ07864 2286 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 SCN8AQ9UQD0 1980 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 IGHV1OR15-9A0A0B4J2B8 117 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 IGKV1-12A0A0C4DH73 117 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 UBE2L5PA0A1B0GUS4 154 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 A8MUU9 505 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 ATOX1O00244 68 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 NUPR1O60356 82 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 IGKV1D-12P01611 117 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 C3orf79P0CE67 100 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 SMIM13P0DJ93 91 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 S100A4P26447 101 aaKnown RBP2.41□□□□□ -2.02
NUP88-208ENST00000574087 ATP5EP56381 51 aaPredicted RBP2.41□□□□□ -2.02
NUP88-208ENST00000574087 HIST1H4AP62805 103 aaKnown RBP2.41□□□□□ -2.02
NUP88-208ENST00000574087 UBE2L3P68036 154 aaKnown RBP2.41□□□□□ -2.02
NUP88-208ENST00000574087 SS18Q15532 418 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 GUSBP11Q6P575 273 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 Q6ZQT7 251 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 C5orf38Q86SI9 138 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 Q8N8P6 123 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 LINC01560Q8TB33 94 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 CIRBP-AS1Q8TBR5 109 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 ITLN2Q8WWU7 325 aaPredicted RBP2.41□□□□□ -2.02
NUP88-208ENST00000574087 FAM103A1Q9BTL3 118 aaKnown RBP2.41□□□□□ -2.02
NUP88-208ENST00000574087 IL36BQ9NZH7 164 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 GNG13Q9P2W3 67 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 TAC3Q9UHF0 121 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 EPDR1Q9UM22 224 aa2.41□□□□□ -2.02
NUP88-208ENST00000574087 BAZ2BQ9UIF8 2168 aaKnown RBP2.41□□□□□ -2.02
NUP88-208ENST00000574087 SHROOM3Q8TF72 1996 aa2.4□□□□□ -2.02
NUP88-208ENST00000574087 IGHV3OR15-7A0A075B7D8 119 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 hADV29S1A0JD25 119 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 A6NN06 94 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 CEBPZOSA8MTT3 80 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 IBA57-AS1B1ANH7 110 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 E7EQL1 145 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 PIN1P1O15428 100 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 HCRTO43612 131 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 IGHV3-7P01780 117 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 IGKV1-16P04430 117 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 MPV17P39210 176 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 FXYD6P3P58550 94 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 CCL8P80075 99 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 SERF2P84101 59 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 OR5AS1Q8N127 324 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 ZNF645Q8N7E2 425 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 OR8B3Q8NGG8 313 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 TSKUQ8WUA8 353 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 OR8B2Q96RD0 313 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 TXNDC17Q9BRA2 123 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 NPCDR1Q9BY65 106 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 PLA2G12AQ9BZM1 189 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 LY96Q9Y6Y9 160 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 ARL2-SNX15V9GYD0 113 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 KCPQ6ZWJ8 1503 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 ANAPC1Q9H1A4 1944 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 SSC5DA1L4H1 1573 aa2.4□□□□□ -2.03
NUP88-208ENST00000574087 TICRRQ7Z2Z1 1910 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.39□□□□□ -2.03
NUP88-208ENST00000574087 TRAV17A0A0B4J275 112 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 MDFIC2A0A1B0GVS7 189 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 TIMM17BO60830 172 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 UBE2G1P62253 170 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 RPL30P62888 115 aaKnown RBP2.39□□□□□ -2.03
NUP88-208ENST00000574087 CFAP126Q5VTH2 177 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 PATE2Q6UY27 113 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 ATP11AUNQ6ZP68 121 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 TMEM136Q6ZRR5 245 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 B9D2Q9BPU9 175 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 CXCL16Q9H2A7 254 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 COL11A1P12107 1806 aaPredicted RBP2.39□□□□□ -2.03
NUP88-208ENST00000574087 SIP14410 1827 aa2.39□□□□□ -2.03
NUP88-208ENST00000574087 COL5A3P25940 1745 aaPredicted RBP2.39□□□□□ -2.03
NUP88-208ENST00000574087 PTPRDP23468 1912 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 ZNF236Q9UL36 1845 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 CASP8AP2Q9UKL3 1982 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 IGLV3-9A0A075B6K5 115 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 CRYM-AS1A6NIL9 109 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 OBSL1O75147 1896 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 IL4P05112 153 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 RNASE2P10153 161 aaKnown RBP2.38□□□□□ -2.03
NUP88-208ENST00000574087 COX8AP10176 69 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 CD28P10747 220 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 PLXNA3P51805 1871 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 BLCAPP62952 87 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 SUPT4H1P63272 117 aaKnown RBP2.38□□□□□ -2.03
NUP88-208ENST00000574087 BSPH1Q075Z2 132 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 ASB16-AS1Q495Z4 193 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 SERP2Q8N6R1 65 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 CCL4L1Q8NHW4 92 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms