RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 OR11H4Q8NGC9 324 aa11.43□□□□□ -0.58
VPS9D1-203ENST00000563798 STOML3Q8TAV4 291 aa11.43□□□□□ -0.58
VPS9D1-203ENST00000563798 M0R036 132 aa11.42□□□□□ -0.58
VPS9D1-203ENST00000563798 RGS21Q2M5E4 152 aa11.42□□□□□ -0.58
VPS9D1-203ENST00000563798 VPS13BQ7Z7G8 4022 aa11.42□□□□□ -0.58
VPS9D1-203ENST00000563798 GRIFINA4D1Z8 144 aa11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 ZNF345Q14585 488 aa11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 DAZ4Q86SG3 579 aaKnown RBP11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 MBD3L1Q8WWY6 194 aa11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 DAZ3Q9NR90 486 aaKnown RBP11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 PHLDA3Q9Y5J5 127 aa11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 COX11Q9Y6N1 276 aa11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 DNAH8Q96JB1 4490 aa11.41□□□□□ -0.58
VPS9D1-203ENST00000563798 TRBV10-1A0A0K0K1A3 114 aa11.4□□□□□ -0.58
VPS9D1-203ENST00000563798 SEC11BP0C7V7 166 aa11.4□□□□□ -0.58
VPS9D1-203ENST00000563798 TPT1P13693 172 aaKnown RBP11.4□□□□□ -0.58
VPS9D1-203ENST00000563798 WFDC2Q14508 124 aa11.4□□□□□ -0.58
VPS9D1-203ENST00000563798 CST9LP1Q5W188 147 aa11.4□□□□□ -0.58
VPS9D1-203ENST00000563798 KCNRGQ8N5I3 272 aa11.4□□□□□ -0.58
VPS9D1-203ENST00000563798 UMAD1C9J7I0 102 aa11.39□□□□□ -0.59
VPS9D1-203ENST00000563798 FAM229AH3BQW9 127 aa11.39□□□□□ -0.59
VPS9D1-203ENST00000563798 SMR3BP02814 79 aaPredicted RBP11.39□□□□□ -0.59
VPS9D1-203ENST00000563798 S100A9P06702 114 aaKnown RBP11.39□□□□□ -0.59
VPS9D1-203ENST00000563798 NIT1Q86X76 327 aa11.39□□□□□ -0.59
VPS9D1-203ENST00000563798 ZFP82Q8N141 532 aa11.39□□□□□ -0.59
VPS9D1-203ENST00000563798 SRRM2Q9UQ35 2752 aaKnown RBP11.39□□□□□ -0.59
VPS9D1-203ENST00000563798 PAGE4O60829 102 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 CXCL1P09341 107 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 AKR1C3P42330 323 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 FAM74A4Q5TZK3 123 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 Q6ZSA8 131 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 CHCHD7Q9BUK0 85 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 MLST8Q9BVC4 326 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 FAM30AQ9NZY2 134 aa11.38□□□□□ -0.59
VPS9D1-203ENST00000563798 A0A087WWL8 130 aa11.37□□□□□ -0.59
VPS9D1-203ENST00000563798 HMSDA8MTL9 139 aa11.37□□□□□ -0.59
VPS9D1-203ENST00000563798 M0R381 172 aa11.37□□□□□ -0.59
VPS9D1-203ENST00000563798 OR10G8Q8NGN5 311 aa11.37□□□□□ -0.59
VPS9D1-203ENST00000563798 TMSB15BA0A087X1C1 80 aa11.36□□□□□ -0.59
VPS9D1-203ENST00000563798 UBE2D3P61077 147 aa11.36□□□□□ -0.59
VPS9D1-203ENST00000563798 UBE2D2P62837 147 aa11.36□□□□□ -0.59
VPS9D1-203ENST00000563798 SFT2D1Q8WV19 159 aa11.36□□□□□ -0.59
VPS9D1-203ENST00000563798 RMI2Q96E14 147 aa11.36□□□□□ -0.59
VPS9D1-203ENST00000563798 SSBP4Q9BWG4 385 aaPredicted RBP11.36□□□□□ -0.59
VPS9D1-203ENST00000563798 DMBT1Q9UGM3 2413 aaPredicted RBP11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 TRBV7-3A0A075B6L6 115 aa11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 SMLR1H3BR10 107 aa11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 HAMPP81172 84 aa11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 RPL36AP83881 106 aaKnown RBP11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 ATRAIDQ6UW56 229 aa11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 RPL36ALQ969Q0 106 aaKnown RBP11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 URGCP-MRPS24S4R325 110 aa11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 MYCBP2O75592 4640 aa11.35□□□□□ -0.59
VPS9D1-203ENST00000563798 A0A0D9SG52 128 aa11.34□□□□□ -0.59
VPS9D1-203ENST00000563798 SNAI2O43623 268 aa11.34□□□□□ -0.59
VPS9D1-203ENST00000563798 RAB4BP61018 213 aa11.34□□□□□ -0.59
VPS9D1-203ENST00000563798 ELOBQ15370 118 aa11.34□□□□□ -0.59
VPS9D1-203ENST00000563798 PRR27Q6MZM9 219 aa11.34□□□□□ -0.59
VPS9D1-203ENST00000563798 FAM213BQ8TBF2 198 aa11.34□□□□□ -0.59
VPS9D1-203ENST00000563798 OR5AL1P0C617 328 aa11.33□□□□□ -0.6
VPS9D1-203ENST00000563798 BAGE2Q86Y30 109 aa11.33□□□□□ -0.6
VPS9D1-203ENST00000563798 Q8N976 141 aa11.33□□□□□ -0.6
VPS9D1-203ENST00000563798 SCO2A0A1W2PP80 73 aa11.32□□□□□ -0.6
VPS9D1-203ENST00000563798 BCL2L11O43521 198 aa11.32□□□□□ -0.6
VPS9D1-203ENST00000563798 PFDN1O60925 122 aa11.32□□□□□ -0.6
VPS9D1-203ENST00000563798 OR10AG1Q8NH19 301 aa11.32□□□□□ -0.6
VPS9D1-203ENST00000563798 BAALCQ8WXS3 180 aa11.32□□□□□ -0.6
VPS9D1-203ENST00000563798 KLK12Q9UKR0 248 aa11.32□□□□□ -0.6
VPS9D1-203ENST00000563798 A0A087WX48 190 aa11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 TRBV6-8A0A0A6YYG3 113 aa11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 LECT2O14960 151 aa11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 EIF5AP63241 154 aaKnown RBP11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 RPL19P84098 196 aaKnown RBP11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 Q0VG73 95 aa11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 DNAJC30Q96LL9 226 aa11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 ZNF471Q9BX82 626 aaPredicted RBP11.31□□□□□ -0.6
VPS9D1-203ENST00000563798 KANTRA0A1W2PQU2 76 aa11.3□□□□□ -0.6
VPS9D1-203ENST00000563798 H2AFB1P0C5Y9 115 aa11.3□□□□□ -0.6
VPS9D1-203ENST00000563798 TMUB2Q71RG4 321 aa11.3□□□□□ -0.6
VPS9D1-203ENST00000563798 NEXN-AS1Q8NBZ9 246 aa11.3□□□□□ -0.6
VPS9D1-203ENST00000563798 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.29□□□□□ -0.6
VPS9D1-203ENST00000563798 IGKV2D-24A0A075B6R9 120 aa11.29□□□□□ -0.6
VPS9D1-203ENST00000563798 KCNIP4Q6PIL6 250 aa11.29□□□□□ -0.6
VPS9D1-203ENST00000563798 UBE2WQ96B02 151 aa11.29□□□□□ -0.6
VPS9D1-203ENST00000563798 FLG2Q5D862 2391 aaPredicted RBP11.29□□□□□ -0.6
VPS9D1-203ENST00000563798 TRAV1-1A0A0B4J248 108 aa11.28□□□□□ -0.6
VPS9D1-203ENST00000563798 C11orf52Q96A22 123 aa11.28□□□□□ -0.6
VPS9D1-203ENST00000563798 KIF25-AS1Q9Y6Z4 181 aa11.28□□□□□ -0.6
VPS9D1-203ENST00000563798 A0A1B0GV50 99 aa11.27□□□□□ -0.61
VPS9D1-203ENST00000563798 PKIAP61925 76 aa11.27□□□□□ -0.61
VPS9D1-203ENST00000563798 ZNF56Q15929 161 aa11.27□□□□□ -0.61
VPS9D1-203ENST00000563798 MANBALQ9NQG1 85 aa11.27□□□□□ -0.61
VPS9D1-203ENST00000563798 VAX2Q9UIW0 290 aa11.27□□□□□ -0.61
VPS9D1-203ENST00000563798 RBFOX3A6NFN3 312 aa11.26□□□□□ -0.61
VPS9D1-203ENST00000563798 PLA2G1BP04054 148 aaKnown RBP11.26□□□□□ -0.61
VPS9D1-203ENST00000563798 RPL35P42766 123 aaKnown RBP11.26□□□□□ -0.61
VPS9D1-203ENST00000563798 TMEM97Q5BJF2 176 aa11.26□□□□□ -0.61
VPS9D1-203ENST00000563798 SPANXN1Q5VSR9 72 aa11.26□□□□□ -0.61
VPS9D1-203ENST00000563798 ENHOQ6UWT2 76 aa11.26□□□□□ -0.61
VPS9D1-203ENST00000563798 TMEM262E9PQX1 116 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms