RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CLRN3Q8NCR9 226 aa8.97□□□□□ -0.97
SHMT2-227ENST00000557269 ANAPC16Q96DE5 110 aa8.97□□□□□ -0.97
SHMT2-227ENST00000557269 DYNC2H1Q8NCM8 4307 aaKnown RBP8.97□□□□□ -0.97
SHMT2-227ENST00000557269 TRGV4A0A0C4DH28 118 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 C7orf77A4D0Y5 90 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 GATA1P15976 413 aaPredicted RBP8.96□□□□□ -0.98
SHMT2-227ENST00000557269 EVI2AP22794 236 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 CRYBA4P53673 196 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 LINC00315P59091 139 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 TWIST1Q15672 202 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 NDUFA5Q16718 116 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 FAM74A4Q5TZK3 123 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 NAT8BQ9UHF3 227 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 HHLA3Q9XRX5 114 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 STARD9Q9P2P6 4700 aa8.96□□□□□ -0.98
SHMT2-227ENST00000557269 FAM3BP58499 235 aaPredicted RBP8.95□□□□□ -0.98
SHMT2-227ENST00000557269 ZFP2Q6ZN57 461 aa8.95□□□□□ -0.98
SHMT2-227ENST00000557269 Q9UF83 564 aa8.95□□□□□ -0.98
SHMT2-227ENST00000557269 APLNQ9ULZ1 77 aa8.95□□□□□ -0.98
SHMT2-227ENST00000557269 KLK5Q9Y337 293 aaPredicted RBP8.95□□□□□ -0.98
SHMT2-227ENST00000557269 LOC100131303A0A0U1RQF7 123 aa8.94□□□□□ -0.98
SHMT2-227ENST00000557269 A0A1B0GUT8 65 aa8.94□□□□□ -0.98
SHMT2-227ENST00000557269 SLC25A29Q8N8R3 303 aa8.94□□□□□ -0.98
SHMT2-227ENST00000557269 AP1S3Q96PC3 154 aa8.94□□□□□ -0.98
SHMT2-227ENST00000557269 PRO0255Q9UI72 69 aa8.94□□□□□ -0.98
SHMT2-227ENST00000557269 PAX4O43316 350 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 CIDEAO60543 219 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 P0DMU3 169 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 FAM231AP0DMU4 169 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 FAM231CP0DMU5 169 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 ATRAIDQ6UW56 229 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 FAM210BQ96KR6 192 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 CTDSP1Q9GZU7 261 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 RPS10P5Q9NQ39 176 aa8.93□□□□□ -0.98
SHMT2-227ENST00000557269 TRBV6-4A0A1B0GX49 114 aa8.92□□□□□ -0.98
SHMT2-227ENST00000557269 RHODO00212 210 aa8.92□□□□□ -0.98
SHMT2-227ENST00000557269 NUDT3O95989 172 aa8.92□□□□□ -0.98
SHMT2-227ENST00000557269 TRGC1P0CF51 173 aa8.92□□□□□ -0.98
SHMT2-227ENST00000557269 RHEBQ15382 184 aa8.92□□□□□ -0.98
SHMT2-227ENST00000557269 MRPL54Q6P161 138 aaKnown RBP8.92□□□□□ -0.98
SHMT2-227ENST00000557269 SVBPQ8N300 66 aa8.92□□□□□ -0.98
SHMT2-227ENST00000557269 BORCS7Q96B45 105 aa8.92□□□□□ -0.98
SHMT2-227ENST00000557269 A0A087WWC5 75 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 A0A096LPF7 62 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 A0A1B0GXF2 115 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 H3BNG1 76 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 MGPP08493 103 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 SMIM17P0DL12 118 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 RAB4BP61018 213 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 SLAQ13239 276 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 RIGQ13278 110 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 ZNF56Q15929 161 aa8.91□□□□□ -0.98
SHMT2-227ENST00000557269 F5H697 171 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 K7EQD1 137 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 SNAPINO95295 136 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 GYPEP15421 78 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 CAMPP49913 170 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 IMMP2LQ96T52 175 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 DPH3P1Q9H4G8 78 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 TMEM242Q9NWH2 141 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 TENM2Q9NT68 2774 aa8.9□□□□□ -0.98
SHMT2-227ENST00000557269 RHOHQ15669 191 aa8.89□□□□□ -0.99
SHMT2-227ENST00000557269 SUMO4Q6EEV6 95 aa8.89□□□□□ -0.99
SHMT2-227ENST00000557269 C15orf53Q8NAA6 179 aa8.89□□□□□ -0.99
SHMT2-227ENST00000557269 RNF185Q96GF1 192 aa8.89□□□□□ -0.99
SHMT2-227ENST00000557269 TMEM191AQ9H0A3 160 aa8.89□□□□□ -0.99
SHMT2-227ENST00000557269 URGCP-MRPS24S4R325 110 aa8.89□□□□□ -0.99
SHMT2-227ENST00000557269 PLECQ15149 4684 aaKnown RBP8.89□□□□□ -0.99
SHMT2-227ENST00000557269 TRAV26-2A0A0B4J265 109 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 GAGE12JA6NER3 117 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 M0QY20 66 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 GAS8-AS1O95177 125 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 TCTAP57738 103 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 GAGE1Q13065 139 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 GAGE4Q13068 117 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 GAGE5Q13069 117 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 GAGE13Q4V321 117 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 AMN1Q8IY45 258 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 PRADC1Q9BSG0 188 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 ICOSQ9Y6W8 199 aa8.88□□□□□ -0.99
SHMT2-227ENST00000557269 LINC00694P0DN24 101 aa8.87□□□□□ -0.99
SHMT2-227ENST00000557269 RAB4AP20338 218 aa8.87□□□□□ -0.99
SHMT2-227ENST00000557269 HBBP68871 147 aa8.87□□□□□ -0.99
SHMT2-227ENST00000557269 MRPL23Q16540 153 aaKnown RBP8.87□□□□□ -0.99
SHMT2-227ENST00000557269 SMIM15Q7Z3B0 74 aa8.87□□□□□ -0.99
SHMT2-227ENST00000557269 GATD1Q8NB37 220 aa8.87□□□□□ -0.99
SHMT2-227ENST00000557269 NEXN-AS1Q8NBZ9 246 aa8.87□□□□□ -0.99
SHMT2-227ENST00000557269 BTF3L4Q96K17 158 aa8.87□□□□□ -0.99
SHMT2-227ENST00000557269 A0A1B0GW15 77 aa8.86□□□□□ -0.99
SHMT2-227ENST00000557269 ESRGQ1W209 222 aa8.86□□□□□ -0.99
SHMT2-227ENST00000557269 KCNIP4Q6PIL6 250 aa8.86□□□□□ -0.99
SHMT2-227ENST00000557269 ATP5L2Q7Z4Y8 100 aa8.86□□□□□ -0.99
SHMT2-227ENST00000557269 TRBV10-1A0A0K0K1A3 114 aa8.85□□□□□ -0.99
SHMT2-227ENST00000557269 S100PP25815 95 aa8.85□□□□□ -0.99
SHMT2-227ENST00000557269 SRIP30626 198 aa8.85□□□□□ -0.99
SHMT2-227ENST00000557269 FAM104BQ5XKR9 115 aa8.85□□□□□ -0.99
SHMT2-227ENST00000557269 ZNRF2Q8NHG8 242 aa8.85□□□□□ -0.99
SHMT2-227ENST00000557269 RPL39LQ96EH5 51 aaKnown RBP8.85□□□□□ -0.99
SHMT2-227ENST00000557269 TGIF2-C20orf24A0A0A6YYL0 155 aa8.84□□□□□ -0.99
SHMT2-227ENST00000557269 SMKR1H3BMG3 65 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms