RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 SPINK13Q1W4C9 94 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 C20orf197Q8N268 126 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 SPTSSBQ8NFR3 76 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 PPDPFLQ8WWR9 84 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 ARL11Q969Q4 196 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 PLAC8Q9NZF1 115 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 ESPL1Q14674 2120 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 GRIN2AQ12879 1464 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 ZNF142P52746 1687 aaPredicted RBP0.4□□□□□ -2.34
SCFD1-217ENST00000555953 MYOM3Q5VTT5 1437 aa0.4□□□□□ -2.34
SCFD1-217ENST00000555953 EMX2Q04743 252 aa0.4□□□□□ -2.35
SCFD1-217ENST00000555953 C9orf116Q5BN46 136 aaPredicted RBP0.4□□□□□ -2.35
SCFD1-217ENST00000555953 MEIG1Q5JSS6 88 aa0.4□□□□□ -2.35
SCFD1-217ENST00000555953 SLC48A1Q6P1K1 146 aa0.4□□□□□ -2.35
SCFD1-217ENST00000555953 PSMG3Q9BT73 122 aaPredicted RBP0.4□□□□□ -2.35
SCFD1-217ENST00000555953 FAM103A1Q9BTL3 118 aaKnown RBP0.4□□□□□ -2.35
SCFD1-217ENST00000555953 PDCD10Q9BUL8 212 aa0.4□□□□□ -2.35
SCFD1-217ENST00000555953 VIRMAQ69YN4 1812 aaKnown RBP0.4□□□□□ -2.35
SCFD1-217ENST00000555953 KIF13AQ9H1H9 1805 aa0.4□□□□□ -2.35
SCFD1-217ENST00000555953 MEGF8Q7Z7M0 2845 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 TRAV12-2A0A075B6T6 113 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 TCRBV3S1A0A5B6 114 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 CCL3L1P16619 93 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 RPL37P61927 97 aaKnown RBP0.39□□□□□ -2.35
SCFD1-217ENST00000555953 SARNPP82979 210 aaKnown RBP0.39□□□□□ -2.35
SCFD1-217ENST00000555953 RBM3P98179 157 aaKnown RBP0.39□□□□□ -2.35
SCFD1-217ENST00000555953 INSL4Q14641 139 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 RPL13AP3Q6NVV1 102 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 KCNRGQ8N5I3 272 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 TMEM141Q96I45 108 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 Q96NJ1 140 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 TMEM191AQ9H0A3 160 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 AGPAT4-IT1Q9H0P7 198 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 SAR1AQ9NR31 198 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 FRAS1Q86XX4 4008 aa0.39□□□□□ -2.35
SCFD1-217ENST00000555953 RBBP6Q7Z6E9 1792 aaKnown RBP0.38□□□□□ -2.35
SCFD1-217ENST00000555953 TMEM2Q9UHN6 1383 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 A0A096LNT2 108 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 FAM25AB3EWG3 89 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 FAM25CB3EWG5 89 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 FAM25GB3EWG6 89 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 DLEU1O43261 78 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 YPEL1O60688 119 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 PRH1P02810 166 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 KRTAP2-3P0C7H8 128 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 UBE2D1P51668 147 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 SPINK7P58062 85 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 SELENOWP63302 87 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 KLKP1Q107X0 134 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 CYP2G1PQ6ZSU1 146 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 Q8N8P6 123 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 KRTAP2-4Q9BYR9 128 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 KRTAP2-1Q9BYU5 128 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 TMEM14BQ9NUH8 114 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 CACNA1EQ15878 2313 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 FOCADQ5VW36 1801 aa0.38□□□□□ -2.35
SCFD1-217ENST00000555953 TRAV2A0A0B4J234 112 aa0.37□□□□□ -2.35
SCFD1-217ENST00000555953 SNCGO76070 127 aa0.37□□□□□ -2.35
SCFD1-217ENST00000555953 GUCA1AP43080 201 aaPredicted RBP0.37□□□□□ -2.35
SCFD1-217ENST00000555953 SPANXN1Q5VSR9 72 aa0.37□□□□□ -2.35
SCFD1-217ENST00000555953 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.37□□□□□ -2.35
SCFD1-217ENST00000555953 SPTSSAQ969W0 71 aa0.37□□□□□ -2.35
SCFD1-217ENST00000555953 DSCR8Q96T75 97 aa0.37□□□□□ -2.35
SCFD1-217ENST00000555953 SMR3AQ99954 134 aa0.37□□□□□ -2.35
SCFD1-217ENST00000555953 USP24Q9UPU5 2620 aa0.37□□□□□ -2.35
SCFD1-217ENST00000555953 TEX49A0A1B0GTD5 131 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 NDUFB6O95139 128 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 SCIMPQ6UWF3 145 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 C4orf33Q8N1A6 199 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 COX7B2Q8TF08 81 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 TSLPQ969D9 159 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 SCN3BQ9NY72 215 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 CASKIN1Q8WXD9 1431 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 SSC5DA1L4H1 1573 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 NAV2Q8IVL1 2488 aa0.36□□□□□ -2.35
SCFD1-217ENST00000555953 GVQW2A0A096LPI5 108 aaPredicted RBP0.35□□□□□ -2.35
SCFD1-217ENST00000555953 TRGV1A0A0A0MS02 117 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 OOSP1A8MZH6 123 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 MIF4GDA9UHW6 222 aaKnown RBP0.35□□□□□ -2.35
SCFD1-217ENST00000555953 PHGR1C9JFL3 82 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 HCG22E2RYF7 251 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 CBLN1P23435 193 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 KRTAP21-1Q3LI58 79 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 SNRNP25Q9BV90 132 aaKnown RBP0.35□□□□□ -2.35
SCFD1-217ENST00000555953 RPRMQ9NS64 109 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 CCDC167Q9P0B6 97 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 LINC00474Q9P2X8 69 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 PAIP2BQ9ULR5 123 aaKnown RBP0.35□□□□□ -2.35
SCFD1-217ENST00000555953 LINC00312Q9Y6C7 94 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 SERP1Q9Y6X1 66 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 ABCA1O95477 2261 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 TANC1Q9C0D5 1861 aa0.35□□□□□ -2.35
SCFD1-217ENST00000555953 ZMYM4Q5VZL5 1548 aa0.34□□□□□ -2.35
SCFD1-217ENST00000555953 FAM92AA1XBS5 289 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 EFCAB10A6NFE3 127 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 MCRIP1C9JLW8 97 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 EDDM3BP56851 147 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 Q6AWC8 147 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 RPL7L1Q6DKI1 246 aaKnown RBP0.34□□□□□ -2.36
SCFD1-217ENST00000555953 C2orf88Q9BSF0 95 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms