RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SVBPQ8N300 66 aa8.6□□□□□ -1.03
SHMT2-209ENST00000553949 BORCS7Q96B45 105 aa8.6□□□□□ -1.03
SHMT2-209ENST00000553949 AP1S3Q96PC3 154 aa8.6□□□□□ -1.03
SHMT2-209ENST00000553949 CTDSP1Q9GZU7 261 aa8.6□□□□□ -1.03
SHMT2-209ENST00000553949 KLK5Q9Y337 293 aaPredicted RBP8.6□□□□□ -1.03
SHMT2-209ENST00000553949 PLECQ15149 4684 aaKnown RBP8.6□□□□□ -1.03
SHMT2-209ENST00000553949 TRAV26-1A0A087WT03 109 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 A0A1B0GUT8 65 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 IGLL5B9A064 214 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 RHODO00212 210 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 RHEBQ15382 184 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 CASC10Q5T4H9 136 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 FAM74A4Q5TZK3 123 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 TMEM88Q6PEY1 159 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 C14orf178Q8N769 122 aaPredicted RBP8.59□□□□□ -1.03
SHMT2-209ENST00000553949 HHLA3Q9XRX5 114 aa8.59□□□□□ -1.03
SHMT2-209ENST00000553949 SNAPINO95295 136 aa8.58□□□□□ -1.04
SHMT2-209ENST00000553949 TRGC1P0CF51 173 aa8.58□□□□□ -1.04
SHMT2-209ENST00000553949 SMIM17P0DL12 118 aa8.58□□□□□ -1.04
SHMT2-209ENST00000553949 CRYBA4P53673 196 aa8.58□□□□□ -1.04
SHMT2-209ENST00000553949 SLAQ13239 276 aa8.58□□□□□ -1.04
SHMT2-209ENST00000553949 FAM210BQ96KR6 192 aa8.58□□□□□ -1.04
SHMT2-209ENST00000553949 PRO0255Q9UI72 69 aa8.58□□□□□ -1.04
SHMT2-209ENST00000553949 CSMD3Q7Z407 3707 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 A0A087WWC5 75 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 A0A0J9YY99 117 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 GATA1P15976 413 aaPredicted RBP8.57□□□□□ -1.04
SHMT2-209ENST00000553949 EVI2AP22794 236 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 FAM3BP58499 235 aaPredicted RBP8.57□□□□□ -1.04
SHMT2-209ENST00000553949 RIGQ13278 110 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 Q6ZSN1 163 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 VSIG2Q96IQ7 327 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 IMMP2LQ96T52 175 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 RPS10P5Q9NQ39 176 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 TMEM242Q9NWH2 141 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 KIF25-AS1Q9Y6Z4 181 aa8.57□□□□□ -1.04
SHMT2-209ENST00000553949 PAX4O43316 350 aa8.56□□□□□ -1.04
SHMT2-209ENST00000553949 LINC00315P59091 139 aa8.56□□□□□ -1.04
SHMT2-209ENST00000553949 SMIM15Q7Z3B0 74 aa8.56□□□□□ -1.04
SHMT2-209ENST00000553949 SLC25A29Q8N8R3 303 aa8.56□□□□□ -1.04
SHMT2-209ENST00000553949 TRBV6-4A0A1B0GX49 114 aa8.55□□□□□ -1.04
SHMT2-209ENST00000553949 H3BNG1 76 aa8.55□□□□□ -1.04
SHMT2-209ENST00000553949 TCTAP57738 103 aa8.55□□□□□ -1.04
SHMT2-209ENST00000553949 RAB4BP61018 213 aa8.55□□□□□ -1.04
SHMT2-209ENST00000553949 ZNF56Q15929 161 aa8.55□□□□□ -1.04
SHMT2-209ENST00000553949 MRPL54Q6P161 138 aaKnown RBP8.55□□□□□ -1.04
SHMT2-209ENST00000553949 DPH3P1Q9H4G8 78 aa8.55□□□□□ -1.04
SHMT2-209ENST00000553949 APLNQ9ULZ1 77 aa8.55□□□□□ -1.04
SHMT2-209ENST00000553949 A0A1B0GW15 77 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 F5H697 171 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 K7EQD1 137 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 MGPP08493 103 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 CAMPP49913 170 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 RHOHQ15669 191 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 KCNIP4Q6PIL6 250 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 ATP5L2Q7Z4Y8 100 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 C15orf53Q8NAA6 179 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 PRADC1Q9BSG0 188 aa8.54□□□□□ -1.04
SHMT2-209ENST00000553949 A0A1B0GXF2 115 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 NUDT3O95989 172 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 GYPEP15421 78 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 S100PP25815 95 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 HBBP68871 147 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 ATRAIDQ6UW56 229 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 BTF3L4Q96K17 158 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 TMEM191AQ9H0A3 160 aa8.53□□□□□ -1.04
SHMT2-209ENST00000553949 TRAV9-1A0A075B6T8 112 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 A0A096LPF7 62 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 LOC100131303A0A0U1RQF7 123 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 S100A8P05109 93 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 SUMO4Q6EEV6 95 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 ICOSQ9Y6W8 199 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 URGCP-MRPS24S4R325 110 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 NACAE9PAV3 2078 aa8.52□□□□□ -1.05
SHMT2-209ENST00000553949 TRBV10-1A0A0K0K1A3 114 aa8.51□□□□□ -1.05
SHMT2-209ENST00000553949 M0QY20 66 aa8.51□□□□□ -1.05
SHMT2-209ENST00000553949 P0DMU3 169 aa8.51□□□□□ -1.05
SHMT2-209ENST00000553949 FAM231AP0DMU4 169 aa8.51□□□□□ -1.05
SHMT2-209ENST00000553949 FAM231CP0DMU5 169 aa8.51□□□□□ -1.05
SHMT2-209ENST00000553949 MRPL23Q16540 153 aaKnown RBP8.51□□□□□ -1.05
SHMT2-209ENST00000553949 GATD1Q8NB37 220 aa8.51□□□□□ -1.05
SHMT2-209ENST00000553949 Q9UF83 564 aa8.51□□□□□ -1.05
SHMT2-209ENST00000553949 GAGE12JA6NER3 117 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 H7C1H1 209 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 RAB4AP20338 218 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 SRIP30626 198 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 GAGE1Q13065 139 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 GAGE4Q13068 117 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 GAGE5Q13069 117 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 GAGE13Q4V321 117 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 AMN1Q8IY45 258 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 RNF185Q96GF1 192 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 DNAH1Q9P2D7 4330 aa8.5□□□□□ -1.05
SHMT2-209ENST00000553949 TRAV26-2A0A0B4J265 109 aa8.49□□□□□ -1.05
SHMT2-209ENST00000553949 FAM104BQ5XKR9 115 aa8.49□□□□□ -1.05
SHMT2-209ENST00000553949 RASL11AQ6T310 242 aa8.49□□□□□ -1.05
SHMT2-209ENST00000553949 NEXN-AS1Q8NBZ9 246 aa8.49□□□□□ -1.05
SHMT2-209ENST00000553949 VPS13DQ5THJ4 4388 aa8.49□□□□□ -1.05
SHMT2-209ENST00000553949 LINC00694P0DN24 101 aa8.48□□□□□ -1.05
SHMT2-209ENST00000553949 RPL36AP83881 106 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms