RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-225	ENST00000527326	HEATR1	Q9H583	2144 aa	Known RBP	4.38	□□□□□ -1.71
CD44-225	ENST00000527326	RETN	Q9HD89	108 aa		4.38	□□□□□ -1.71
CD44-225	ENST00000527326	RIF1	Q5UIP0	2472 aa	Known RBP	4.38	□□□□□ -1.71
CD44-225	ENST00000527326	C2orf16	Q68DN1	1984 aa		4.38	□□□□□ -1.71
CD44-225	ENST00000527326	SETX	Q7Z333	2677 aa	Known RBP	4.38	□□□□□ -1.71
CD44-225	ENST00000527326	IGHV4-4	A0A075B6R2	117 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	TRAV8-3	A0A0A6YYJ7	113 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326		H3BRN7	92 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326		H3BTX0	84 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326		M0R381	172 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	SLPI	P03973	132 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	SAA1	P0DJI8	122 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-225	ENST00000527326	UBE2E1	P51965	193 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	CFHR3	Q02985	330 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	NSUN5P1	Q3KNT7	163 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	S100A7L2	Q5SY68	101 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	FP248	Q71RG6	208 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-225	ENST00000527326	C17orf82	Q86X59	251 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-225	ENST00000527326	DYNAP	Q8N1N2	210 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	C14orf178	Q8N769	122 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-225	ENST00000527326	IL17D	Q8TAD2	202 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	TMEM167A	Q8TBQ9	72 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	FAM30A	Q9NZY2	134 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	CACNA1H	O95180	2353 aa		4.37	□□□□□ -1.71
CD44-225	ENST00000527326	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-225	ENST00000527326	MAP1B	P46821	2468 aa	Known RBP	4.37	□□□□□ -1.71
CD44-225	ENST00000527326	VPS13A	Q96RL7	3174 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326		I3L3M4	83 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	SPRY2	O43597	315 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	NDUFC1	O43677	76 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	GAS8-AS1	O95177	125 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	DNAL4	O96015	105 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	SAA2	P0DJI9	122 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-225	ENST00000527326	GATA1	P15976	413 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-225	ENST00000527326	XCL1	P47992	114 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	TSPEAR-AS2	P59090	65 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	SUMO2	P61956	95 aa	Known RBP	4.36	□□□□□ -1.71
CD44-225	ENST00000527326	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-225	ENST00000527326		Q6ZRU5	148 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	ZNF491	Q8N8L2	437 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	CLEC2B	Q92478	149 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	TIMM17A	Q99595	171 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	MSRB1	Q9NZV6	116 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	XCL2	Q9UBD3	114 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	SPTBN2	O15020	2390 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	SPAG17	Q6Q759	2223 aa		4.36	□□□□□ -1.71
CD44-225	ENST00000527326	ACACB	O00763	2458 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	ANKRD11	Q6UB99	2663 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-225	ENST00000527326	IGHV1OR21-1	A0A087WYE8	117 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	TRBV7-6	A0A0J9YX20	115 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	PLAC8L1	A1L4L8	177 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	FAM223B	A6NKX1	122 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	COX7A2L	O14548	114 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	LINC01565	O15544	149 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	IGHV4-34	P06331	123 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	CD59	P13987	128 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	LYZ	P61626	148 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	DAZ2	Q13117	558 aa	Known RBP	4.35	□□□□□ -1.71
CD44-225	ENST00000527326	GFRAL	Q6UXV0	394 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	DAZ4	Q86SG3	579 aa	Known RBP	4.35	□□□□□ -1.71
CD44-225	ENST00000527326	C17orf77	Q96MU5	243 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	OVOL2	Q9BRP0	275 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	CXXC4	Q9H2H0	198 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	DAZ1	Q9NQZ3	744 aa	Known RBP	4.35	□□□□□ -1.71
CD44-225	ENST00000527326	DAZ3	Q9NR90	486 aa	Known RBP	4.35	□□□□□ -1.71
CD44-225	ENST00000527326	CTSZ	Q9UBR2	303 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	UBE2D4	Q9Y2X8	147 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	FASN	P49327	2511 aa	Known RBP	4.35	□□□□□ -1.71
CD44-225	ENST00000527326	DMXL1	Q9Y485	3027 aa		4.35	□□□□□ -1.71
CD44-225	ENST00000527326	DYSF	O75923	2080 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	GVINP1	Q7Z2Y8	2422 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	IGLV3-12	A0A075B6K2	115 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	IGHV3OR16-10	A0A075B7F0	116 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	IGKV3D-15	A0A087WSY6	115 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	IGHV3-20	A0A0C4DH32	117 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	IGHV5-51	A0A0C4DH38	117 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326		A0A0J9YXY3	114 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	TRBV10-3	A0A0K0K1G6	114 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326		H7BZZ5	65 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	TIMM17B	O60830	172 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	MRPL33	O75394	65 aa	Known RBP	4.34	□□□□□ -1.71
CD44-225	ENST00000527326	PRSS2	P07478	247 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	WT1-AS	Q06250	92 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	KLKP1	Q107X0	134 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	MIA	Q16674	131 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	MRPL55	Q7Z7F7	128 aa	Known RBP	4.34	□□□□□ -1.71
CD44-225	ENST00000527326	FAM223A	Q8IWN6	122 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	TMEM61	Q8N0U2	210 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	TMEM105	Q8N8V8	129 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326		Q96MF0	132 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	DCTN5	Q9BTE1	182 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	KLK15	Q9H2R5	256 aa		4.34	□□□□□ -1.71
CD44-225	ENST00000527326	MRPL36	Q9P0J6	103 aa	Known RBP	4.34	□□□□□ -1.71
CD44-225	ENST00000527326	USP24	Q9UPU5	2620 aa		4.33	□□□□□ -1.72
CD44-225	ENST00000527326	RAI1	Q7Z5J4	1906 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-225	ENST00000527326	TRAV7	A0A075B6U4	112 aa		4.33	□□□□□ -1.72
CD44-225	ENST00000527326	IGIP	A6NJ69	53 aa		4.33	□□□□□ -1.72
CD44-225	ENST00000527326	NXPH4	O95158	308 aa		4.33	□□□□□ -1.72
CD44-225	ENST00000527326	IGHV1-69	P01742	117 aa		4.33	□□□□□ -1.72
CD44-225	ENST00000527326	BAALC-AS2	P0C853	105 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms