RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 Q86TA4 180 aa9.46□□□□□ -0.9
CPSF1-201ENST00000526271 DERL1Q9BUN8 251 aa9.46□□□□□ -0.9
CPSF1-201ENST00000526271 MLST8Q9BVC4 326 aa9.46□□□□□ -0.9
CPSF1-201ENST00000526271 TREM1Q9NP99 234 aa9.46□□□□□ -0.9
CPSF1-201ENST00000526271 IGHV3-38A0A0C4DH36 116 aa9.45□□□□□ -0.9
CPSF1-201ENST00000526271 LINC00862A6NCI5 91 aa9.45□□□□□ -0.9
CPSF1-201ENST00000526271 ORM1P02763 201 aa9.45□□□□□ -0.9
CPSF1-201ENST00000526271 NTN5Q8WTR8 489 aaPredicted RBP9.45□□□□□ -0.9
CPSF1-201ENST00000526271 SPXQ9BT56 116 aa9.45□□□□□ -0.9
CPSF1-201ENST00000526271 NDFIP1Q9BT67 221 aa9.45□□□□□ -0.9
CPSF1-201ENST00000526271 TYMSP04818 313 aa9.44□□□□□ -0.9
CPSF1-201ENST00000526271 SMUG1Q53HV7 270 aa9.44□□□□□ -0.9
CPSF1-201ENST00000526271 FAM159AQ6UWV7 190 aa9.44□□□□□ -0.9
CPSF1-201ENST00000526271 BAGE2Q86Y30 109 aa9.44□□□□□ -0.9
CPSF1-201ENST00000526271 PARLQ9H300 379 aa9.44□□□□□ -0.9
CPSF1-201ENST00000526271 C11orf21Q9P2W6 132 aa9.44□□□□□ -0.9
CPSF1-201ENST00000526271 TRGV11A0A075B6L2 103 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 J3QL48 77 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 IGLV2-8P01709 118 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 CRIP1P50238 77 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 ZNF80P51504 273 aaPredicted RBP9.43□□□□□ -0.9
CPSF1-201ENST00000526271 LINC01620Q4KN68 170 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 C10orf126Q8N4M7 172 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 SLC25A29Q8N8R3 303 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 SMIM12Q96EX1 92 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 Q9HAA7 133 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 Q9UF83 564 aa9.43□□□□□ -0.9
CPSF1-201ENST00000526271 TRBV20OR9-2A0A075B6H5 130 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 C9JCJ5 164 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 M0R2P5 195 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 GCGP01275 180 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 IGHV3-30P01768 117 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 IGHV3-33P01772 117 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 IGHV3-30-3P0DP02 117 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 IGHV3-30-5P0DP03 117 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 CENPWQ5EE01 88 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 UQCC3Q6UW78 93 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 LINC00528Q8N1L1 170 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 OR4C5Q8NGB2 326 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 ZC2HC1AQ96GY0 325 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 NAGKQ9UJ70 344 aa9.42□□□□□ -0.9
CPSF1-201ENST00000526271 TRAV21A0A0B4J279 112 aa9.41□□□□□ -0.9
CPSF1-201ENST00000526271 GNG4P50150 75 aa9.41□□□□□ -0.9
CPSF1-201ENST00000526271 ZNF674Q2M3X9 581 aa9.41□□□□□ -0.9
CPSF1-201ENST00000526271 FAM74A3Q4VXF1 159 aa9.41□□□□□ -0.9
CPSF1-201ENST00000526271 DNAJC30Q96LL9 226 aa9.41□□□□□ -0.9
CPSF1-201ENST00000526271 FABP5P3A8MUU1 101 aa9.4□□□□□ -0.9
CPSF1-201ENST00000526271 LECT2O14960 151 aa9.4□□□□□ -0.9
CPSF1-201ENST00000526271 PFN1P07737 140 aaKnown RBP9.4□□□□□ -0.9
CPSF1-201ENST00000526271 LINC00694P0DN24 101 aa9.4□□□□□ -0.9
CPSF1-201ENST00000526271 CEBPGP53567 150 aa9.4□□□□□ -0.9
CPSF1-201ENST00000526271 COMMD7Q86VX2 200 aa9.4□□□□□ -0.9
CPSF1-201ENST00000526271 NHLRC2Q8NBF2 726 aa9.4□□□□□ -0.9
CPSF1-201ENST00000526271 OCC1Q8TAD7 63 aa9.4□□□□□ -0.9
CPSF1-201ENST00000526271 PGPEP1LA6NFU8 196 aa9.39□□□□□ -0.91
CPSF1-201ENST00000526271 ZNF727A8MUV8 499 aa9.39□□□□□ -0.91
CPSF1-201ENST00000526271 RS1O15537 224 aa9.39□□□□□ -0.91
CPSF1-201ENST00000526271 PSCAO43653 123 aa9.39□□□□□ -0.91
CPSF1-201ENST00000526271 CFAP126Q5VTH2 177 aa9.39□□□□□ -0.91
CPSF1-201ENST00000526271 SMIM7Q9BQ49 75 aa9.39□□□□□ -0.91
CPSF1-201ENST00000526271 IGHV3-73A0A0B4J1V6 119 aa9.38□□□□□ -0.91
CPSF1-201ENST00000526271 FAM162BQ5T6X4 162 aa9.38□□□□□ -0.91
CPSF1-201ENST00000526271 SCXQ7RTU7 201 aa9.38□□□□□ -0.91
CPSF1-201ENST00000526271 KCNS1Q96KK3 526 aa9.38□□□□□ -0.91
CPSF1-201ENST00000526271 K7EN84 100 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 SH2D1AO60880 128 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 TMEM241Q24JQ0 296 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 OR10J3Q5JRS4 329 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 LELP1Q5T871 98 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 C9orf85Q96MD7 179 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 SDF2L1Q9HCN8 221 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 BIN3Q9NQY0 253 aa9.37□□□□□ -0.91
CPSF1-201ENST00000526271 IGKV3D-20A0A0C4DH25 116 aa9.36□□□□□ -0.91
CPSF1-201ENST00000526271 TMEM218A2RU14 115 aa9.36□□□□□ -0.91
CPSF1-201ENST00000526271 C19orf71A6NCJ1 209 aa9.36□□□□□ -0.91
CPSF1-201ENST00000526271 MGST1P10620 155 aaKnown RBP9.36□□□□□ -0.91
CPSF1-201ENST00000526271 RNASE3P12724 160 aaKnown RBP9.36□□□□□ -0.91
CPSF1-201ENST00000526271 SH2D6Q7Z4S9 175 aa9.36□□□□□ -0.91
CPSF1-201ENST00000526271 DAZ4Q86SG3 579 aaKnown RBP9.36□□□□□ -0.91
CPSF1-201ENST00000526271 LINC01551Q86U37 167 aa9.36□□□□□ -0.91
CPSF1-201ENST00000526271 DAZ3Q9NR90 486 aaKnown RBP9.36□□□□□ -0.91
CPSF1-201ENST00000526271 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.35□□□□□ -0.91
CPSF1-201ENST00000526271 TRBV6-4A0A1B0GX49 114 aa9.35□□□□□ -0.91
CPSF1-201ENST00000526271 KRBOX1C9JBD0 128 aa9.35□□□□□ -0.91
CPSF1-201ENST00000526271 LAGE3Q14657 143 aa9.35□□□□□ -0.91
CPSF1-201ENST00000526271 LINC01559Q495D7 138 aa9.35□□□□□ -0.91
CPSF1-201ENST00000526271 NAT8Q9UHE5 227 aa9.35□□□□□ -0.91
CPSF1-201ENST00000526271 TRAV8-6A0A0B4J262 113 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 PLA2G1BP04054 148 aaKnown RBP9.34□□□□□ -0.91
CPSF1-201ENST00000526271 HNRNPA3P51991 378 aaKnown RBP9.34□□□□□ -0.91
CPSF1-201ENST00000526271 RPL23P62829 140 aaKnown RBP9.34□□□□□ -0.91
CPSF1-201ENST00000526271 ZNF876PQ49A33 203 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 DNLZQ5SXM8 178 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 PRR27Q6MZM9 219 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 FAM231DQ6ZW35 169 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 NUDT10Q8NFP7 164 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 DEFB104AQ8WTQ1 72 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 BAALCQ8WXS3 180 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 NUDT11Q96G61 164 aa9.34□□□□□ -0.91
CPSF1-201ENST00000526271 GTSF1LQ9H1H1 148 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 208.7 ms