RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 H3BRM9 83 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SYS1-DBNDD2H3BUS1 97 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCL16O15467 120 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 NUPR1O60356 82 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 BCE1O60756 84 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SIX6O95475 246 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SFT2D2O95562 160 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CYB5AP00167 134 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGHV3-30P01768 117 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKCP01834 107 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MT-ATP8P03928 68 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCKP06307 115 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGHV3-30-5P0DP03 117 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SLC25A6P12236 298 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 GNG11P61952 73 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CNBPP62633 177 aaKnown RBP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SEC11AP67812 179 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 RBM3P98179 157 aaKnown RBP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MIR22HGQ0VDD5 57 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PEA15Q15121 130 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MPV17LQ2QL34 196 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTAP13-2Q52LG2 175 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 FAM74A1Q5RGS3 127 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 C10orf55Q5SWW7 151 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 S100A7L2Q5SY68 101 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 LCE3CQ5T5A8 94 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 LCE1FQ5T754 118 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PRR9Q5T870 116 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGFL1Q6UW32 110 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 LYPD5Q6UWN5 251 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF818PQ6ZRF7 136 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CLECL1Q8IZS7 167 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SERP2Q8N6R1 65 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 C9orf163Q8N9P6 203 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PPP1R1CQ8WVI7 109 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 C10orf82Q8WW14 230 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PATE1Q8WXA2 126 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TSLPQ969D9 159 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TVP23CQ96ET8 276 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00052Q96N35 136 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 S100A13Q99584 98 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRGV9Q99603 122 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PMCHL2Q9BQD1 86 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TIMM21Q9BVV7 248 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PRO1933Q9H354 126 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 NPVFQ9HCQ7 196 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CDC42SE1Q9NRR8 79 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 UQCR10Q9UDW1 63 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CACFD1Q9UGQ2 172 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCL26Q9Y258 94 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 GOLGA3Q08378 1498 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 NCOA2Q15596 1464 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MLH3Q9UHC1 1453 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYOM1P52179 1685 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ADAMTS7Q9UKP4 1686 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MGAMO43451 1857 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCDC88AQ3V6T2 1871 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 DOCK8Q8NF50 2099 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 LCTP09848 1927 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 HELZP42694 1942 aaKnown RBP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ANAPC1Q9H1A4 1944 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYH13Q9UKX3 1938 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 LRRIQ1Q96JM4 1722 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ABCC1P33527 1531 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CUX1P39880 1505 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 KCPQ6ZWJ8 1503 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MCM3APO60318 1980 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 THADAQ6YHU6 1953 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 MUC22E2RYF6 1773 aaPredicted RBP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 RGPD4Q7Z3J3 1758 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ADGRB2O60241 1585 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 INO80Q9ULG1 1556 aaPredicted RBP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PCM1Q15154 2024 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZSWIM8A7E2V4 1837 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 PARP14Q460N5 1801 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 PATJQ8NI35 1801 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 BLMP54132 1417 aaPredicted RBP0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 EEA1Q15075 1411 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 ANKARQ7Z5J8 1434 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 ANK1P16157 1881 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 DOCK1Q14185 1865 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 COL4A4P53420 1690 aaPredicted RBP0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZC3H13Q5T200 1668 aaKnown RBP0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 PPRC1Q5VV67 1664 aaKnown RBP0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV3-7A0A075B6H7 116 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV7-3A0A075B6L6 115 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV6-8A0A0A6YYG3 113 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRGV4A0A0C4DH28 118 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A0G2JQZ4 141 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 TEX49A0A1B0GTD5 131 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 LOC285095A0A1B0GVY8 99 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A1W2PNN7 141 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 KANTRA0A1W2PQU2 76 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 hADV29S1A0JD25 119 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLC7A0M8Q6 106 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 HCG22E2RYF7 251 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 F2Z2F3 143 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 JMJD7-PLA2G4BH0Y9G9 81 aa0.31□□□□□ -2.36
RNU4-54P-201ENST00000516428 H3BRN7 92 aa0.31□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms