RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MDFICQ9P1T7 246 aa11□□□□□ -0.65
NUP54-217ENST00000514987 ZNF256Q9Y2P7 627 aaPredicted RBP11□□□□□ -0.65
NUP54-217ENST00000514987 USP24Q9UPU5 2620 aa11□□□□□ -0.65
NUP54-217ENST00000514987 OR11H12B2RN74 326 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 K7EP13 123 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 RHOHQ15669 191 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 PIK3CD-AS1Q5SR53 167 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 OR11H1Q8NG94 326 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 OR11H2Q8NH07 326 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 TIMM17AQ99595 171 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 JPT2Q9H910 190 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 SDHAF1A6NFY7 115 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 PRSS29PA6NIE9 313 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 CRYGDP07320 174 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 SMIM13P0DJ93 91 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 GTF2H5Q6ZYL4 71 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 TM2D2Q9BX73 214 aa10.99□□□□□ -0.65
NUP54-217ENST00000514987 UBR5O95071 2799 aaPredicted RBP10.98□□□□□ -0.65
NUP54-217ENST00000514987 ZNF462Q96JM2 2506 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 IGIPA6NJ69 53 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 M0QY20 66 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 DEFB131AP59861 70 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 ZNF56Q15929 161 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 ZNF876PQ49A33 203 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 PTH2Q96A98 100 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 EDA2RQ9HAV5 297 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 TP53TG1Q9Y2A0 90 aa10.98□□□□□ -0.65
NUP54-217ENST00000514987 TRAV8-6A0A0B4J262 113 aa10.97□□□□□ -0.65
NUP54-217ENST00000514987 E9PLD3 99 aa10.97□□□□□ -0.65
NUP54-217ENST00000514987 H3BMM0 161 aa10.97□□□□□ -0.65
NUP54-217ENST00000514987 GCSHP23434 173 aa10.97□□□□□ -0.65
NUP54-217ENST00000514987 PMVKQ15126 192 aa10.97□□□□□ -0.65
NUP54-217ENST00000514987 FAM74A4Q5TZK3 123 aa10.97□□□□□ -0.65
NUP54-217ENST00000514987 DYNLRB2Q8TF09 96 aa10.97□□□□□ -0.65
NUP54-217ENST00000514987 MYMXA0A1B0GTQ4 84 aa10.96□□□□□ -0.65
NUP54-217ENST00000514987 DEFB136Q30KP8 78 aa10.96□□□□□ -0.65
NUP54-217ENST00000514987 NSUN5P1Q3KNT7 163 aa10.96□□□□□ -0.65
NUP54-217ENST00000514987 CEND1Q8N111 149 aa10.96□□□□□ -0.65
NUP54-217ENST00000514987 LINC00467Q9BRT7 94 aa10.96□□□□□ -0.65
NUP54-217ENST00000514987 TRAV25A0A0B4J276 109 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 GAGE10A6NGK3 116 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 HERVK_113P61574 105 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 C18orf65Q6ZTR6 163 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 KLHL30-AS1Q8NEE0 82 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 CLUHP3Q96NS8 147 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 SPAG8Q99932 426 aaPredicted RBP10.95□□□□□ -0.66
NUP54-217ENST00000514987 FAM208BQ5VWN6 2430 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 SVEP1Q4LDE5 3571 aa10.95□□□□□ -0.66
NUP54-217ENST00000514987 KNCNA6PVL3 124 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 KHDC1LQ5JSQ8 128 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 NEGR1Q7Z3B1 354 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 TMEM61Q8N0U2 210 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 MAPKAPK5-AS1Q8N8E1 139 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 TTTY13Q9BZ97 58 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 CELSR1Q9NYQ6 3014 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 I3L3M4 83 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 ZNF415Q09FC8 603 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 DEFB114Q30KQ6 69 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 Q6ZSV7 163 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 RAX2Q96IS3 184 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 CST9LQ9H4G1 147 aa10.94□□□□□ -0.66
NUP54-217ENST00000514987 USP9YO00507 2555 aaPredicted RBP10.93□□□□□ -0.66
NUP54-217ENST00000514987 A8MWV9 139 aa10.93□□□□□ -0.66
NUP54-217ENST00000514987 H3BUT2 72 aa10.93□□□□□ -0.66
NUP54-217ENST00000514987 DLX4Q92988 240 aaPredicted RBP10.93□□□□□ -0.66
NUP54-217ENST00000514987 DNAJC9-AS1A6NH13 148 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 M0R2P5 195 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 TSHBP01222 138 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 FXYD2P54710 66 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 MORN3Q6PF18 240 aaPredicted RBP10.92□□□□□ -0.66
NUP54-217ENST00000514987 OR5A1Q8NGJ0 315 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 DUX3Q96PT4 197 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 HIST1H4GQ99525 98 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 PRADC1Q9BSG0 188 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 MAP6D1Q9H9H5 199 aa10.92□□□□□ -0.66
NUP54-217ENST00000514987 A0A1W2PPM0 123 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 K7EP34 96 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 FABP2P12104 132 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 UFSP1Q6NVU6 142 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 SPXQ9BT56 116 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 CBY1Q9Y3M2 126 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 CELSR2Q9HCU4 2923 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 UTP20O75691 2785 aaKnown RBP10.91□□□□□ -0.66
NUP54-217ENST00000514987 FBN2P35556 2912 aa10.91□□□□□ -0.66
NUP54-217ENST00000514987 C11orf86A6NJI1 115 aa10.9□□□□□ -0.66
NUP54-217ENST00000514987 RBMY1A1P0DJD3 496 aaKnown RBP10.9□□□□□ -0.66
NUP54-217ENST00000514987 RBMY1CP0DJD4 496 aa10.9□□□□□ -0.66
NUP54-217ENST00000514987 SCGB2A2Q13296 93 aa10.9□□□□□ -0.66
NUP54-217ENST00000514987 RBMY1FQ15415 496 aaKnown RBP10.9□□□□□ -0.66
NUP54-217ENST00000514987 RAB37Q96AX2 223 aa10.9□□□□□ -0.66
NUP54-217ENST00000514987 LRRK2Q5S007 2527 aa10.9□□□□□ -0.66
NUP54-217ENST00000514987 IGLV4-69A0A075B6H9 119 aa10.9□□□□□ -0.67
NUP54-217ENST00000514987 RHODO00212 210 aa10.9□□□□□ -0.67
NUP54-217ENST00000514987 INSP01308 110 aa10.9□□□□□ -0.67
NUP54-217ENST00000514987 RPL39P62891 51 aaKnown RBP10.9□□□□□ -0.67
NUP54-217ENST00000514987 SAMD5Q5TGI4 173 aa10.9□□□□□ -0.67
NUP54-217ENST00000514987 C20orf203Q8NBC4 194 aa10.9□□□□□ -0.67
NUP54-217ENST00000514987 NAV2Q8IVL1 2488 aa10.89□□□□□ -0.67
NUP54-217ENST00000514987 TRBV7-3A0A075B6L6 115 aa10.89□□□□□ -0.67
NUP54-217ENST00000514987 GAGE12BA1L429 117 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 588.2 ms