RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HIST1H4AP62805 103 aaKnown RBP9.8□□□□□ -0.84
USP53-209ENST00000514665 Q71RC1 249 aaPredicted RBP9.8□□□□□ -0.84
USP53-209ENST00000514665 LOXL1Q08397 574 aaPredicted RBP9.8□□□□□ -0.84
USP53-209ENST00000514665 NXPH4O95158 308 aa9.8□□□□□ -0.84
USP53-209ENST00000514665 EIF4EBP1Q13541 118 aaPredicted RBP9.8□□□□□ -0.84
USP53-209ENST00000514665 LAMTOR3Q9UHA4 124 aa9.8□□□□□ -0.84
USP53-209ENST00000514665 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.79□□□□□ -0.84
USP53-209ENST00000514665 IGKV2-29A2NJV5 120 aaPredicted RBP9.79□□□□□ -0.84
USP53-209ENST00000514665 TAL2Q16559 108 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 GAGE2AQ6NT46 116 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 C5orf56Q8N8D9 126 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 PPDPFLQ8WWR9 84 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 SCRT2Q9NQ03 307 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 C2orf70A6NJV1 201 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 FXYD2P54710 66 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 SS18Q15532 418 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 C16orf54Q6UWD8 224 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 SH2D6Q7Z4S9 175 aa9.79□□□□□ -0.84
USP53-209ENST00000514665 A0A096LPF7 62 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 A0A0J9YXV3 536 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 APRG1Q8IVJ8 170 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 RNASE8Q8TDE3 154 aaKnown RBP9.78□□□□□ -0.84
USP53-209ENST00000514665 TMEM243Q9BU79 118 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 H3BUA1 57 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 VPREB3Q9UKI3 123 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 NUP210LQ5VU65 1888 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 LINC01548A6NM66 108 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 SLURP1P55000 103 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 DAZAP2Q15038 168 aaPredicted RBP9.78□□□□□ -0.84
USP53-209ENST00000514665 UNQ9165/PRO28630Q6UXU0 137 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 TP73-AS1Q9UF72 201 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 SZT2Q5T011 3432 aa9.78□□□□□ -0.84
USP53-209ENST00000514665 LGALS1P09382 135 aaKnown RBP9.77□□□□□ -0.84
USP53-209ENST00000514665 ZNF80P51504 273 aaPredicted RBP9.77□□□□□ -0.84
USP53-209ENST00000514665 RPL39P62891 51 aaKnown RBP9.77□□□□□ -0.84
USP53-209ENST00000514665 U3KQE9 123 aa9.77□□□□□ -0.84
USP53-209ENST00000514665 SUMO4Q6EEV6 95 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 YPEL4Q96NS1 127 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 LINC00574Q9H8X3 128 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 TEX48A0A1B0GUV7 120 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 F5H768 121 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 TRBV12-3P01733 135 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 FOXI2Q6ZQN5 318 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 A0A1B0GXF2 115 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 GAGE12HA6NDE8 117 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 H3BMM0 161 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 J3QLI3 93 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 UBE2WQ96B02 151 aa9.77□□□□□ -0.85
USP53-209ENST00000514665 POLQO75417 2590 aa9.76□□□□□ -0.85
USP53-209ENST00000514665 C10orf142B7Z368 130 aa9.76□□□□□ -0.85
USP53-209ENST00000514665 RNF114Q9Y508 228 aa9.76□□□□□ -0.85
USP53-209ENST00000514665 TAX1BP3O14907 124 aa9.76□□□□□ -0.85
USP53-209ENST00000514665 PRB1P04280 392 aa9.76□□□□□ -0.85
USP53-209ENST00000514665 CTRLP40313 264 aa9.76□□□□□ -0.85
USP53-209ENST00000514665 MLST8Q9BVC4 326 aa9.75□□□□□ -0.85
USP53-209ENST00000514665 GHRHP01286 108 aa9.75□□□□□ -0.85
USP53-209ENST00000514665 CLPSL2Q6UWE3 100 aa9.75□□□□□ -0.85
USP53-209ENST00000514665 ZFP2Q6ZN57 461 aa9.75□□□□□ -0.85
USP53-209ENST00000514665 MUC22E2RYF6 1773 aaPredicted RBP9.75□□□□□ -0.85
USP53-209ENST00000514665 NTN5Q8WTR8 489 aaPredicted RBP9.75□□□□□ -0.85
USP53-209ENST00000514665 NOP10Q9NPE3 64 aaKnown RBP9.75□□□□□ -0.85
USP53-209ENST00000514665 IGLL5B9A064 214 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 C10orf105Q8TEF2 133 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 SPEGQ15772 3267 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 ZNF48Q96MX3 618 aaPredicted RBP9.74□□□□□ -0.85
USP53-209ENST00000514665 PRRC2AP48634 2157 aaKnown RBP9.74□□□□□ -0.85
USP53-209ENST00000514665 CEP192Q8TEP8 1941 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 Q8N1Y9 231 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 SIRPDQ9H106 197 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 TP53TG3Q9ULZ0 132 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 CFC1BP0CG36 223 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 CFC1P0CG37 223 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 RHOHQ15669 191 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 MBD6Q96DN6 1003 aa9.74□□□□□ -0.85
USP53-209ENST00000514665 FASNP49327 2511 aaKnown RBP9.73□□□□□ -0.85
USP53-209ENST00000514665 ZNF462Q96JM2 2506 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 C9orf47Q6ZRZ4 202 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 DAD1P61803 113 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 ODF1Q14990 250 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 BOD1L2Q8IYS8 172 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 WFDC2Q14508 124 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 FBXL19-AS1Q494R0 122 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 PRO3102Q9H379 93 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 REV3LO60673 3130 aa9.73□□□□□ -0.85
USP53-209ENST00000514665 CARD19Q96LW7 228 aa9.72□□□□□ -0.85
USP53-209ENST00000514665 Q9H8V8 135 aa9.72□□□□□ -0.85
USP53-209ENST00000514665 DEFB121Q5J5C9 76 aa9.72□□□□□ -0.85
USP53-209ENST00000514665 IGHV4OR15-8A0A075B7B6 117 aa9.71□□□□□ -0.85
USP53-209ENST00000514665 A0A087WW49 117 aa9.71□□□□□ -0.85
USP53-209ENST00000514665 A4D1N5 150 aa9.71□□□□□ -0.85
USP53-209ENST00000514665 SRSF2Q01130 221 aaKnown RBP9.71□□□□□ -0.85
USP53-209ENST00000514665 HERVK_113P63121 156 aa9.71□□□□□ -0.86
USP53-209ENST00000514665 CCDC140Q96MF4 163 aa9.71□□□□□ -0.86
USP53-209ENST00000514665 SPAG8Q99932 426 aaPredicted RBP9.71□□□□□ -0.86
USP53-209ENST00000514665 CCL24O00175 119 aa9.71□□□□□ -0.86
USP53-209ENST00000514665 LMO4P61968 165 aa9.71□□□□□ -0.86
USP53-209ENST00000514665 MDFICQ9P1T7 246 aa9.7□□□□□ -0.86
USP53-209ENST00000514665 EML5Q05BV3 1969 aa9.7□□□□□ -0.86
USP53-209ENST00000514665 IGHG2P01859 326 aa9.7□□□□□ -0.86
USP53-209ENST00000514665 C5orf38Q86SI9 138 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms