RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 SAMD10Q9BYL1 202 aa11.54□□□□□ -0.56
SYNE1-227ENST00000489156 HSBP1O75506 76 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 SMIM17P0DL12 118 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 POM121L12Q8N7R1 296 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 SPXQ9BT56 116 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 A8MZ25 164 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 ZNF876PQ49A33 203 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 RNASEKQ6P5S7 137 aaKnown RBP11.53□□□□□ -0.56
SYNE1-227ENST00000489156 GSN-AS1Q9NRJ2 163 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 GOLT1BQ9Y3E0 138 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 KIF25-AS1Q9Y6Z4 181 aa11.53□□□□□ -0.56
SYNE1-227ENST00000489156 NPYP01303 97 aa11.52□□□□□ -0.57
SYNE1-227ENST00000489156 SMIM6P0DI80 62 aa11.52□□□□□ -0.57
SYNE1-227ENST00000489156 C11orf72Q8NBR9 251 aa11.52□□□□□ -0.57
SYNE1-227ENST00000489156 PRSS3P2Q8NHM4 247 aa11.52□□□□□ -0.57
SYNE1-227ENST00000489156 MRAPQ8TCY5 172 aa11.52□□□□□ -0.57
SYNE1-227ENST00000489156 URB1-AS1Q96HZ7 61 aa11.52□□□□□ -0.57
SYNE1-227ENST00000489156 MEGF8Q7Z7M0 2845 aa11.52□□□□□ -0.57
SYNE1-227ENST00000489156 PRSS47A8MTI9 375 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 M0R2P5 195 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 TNFRSF6BO95407 300 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 PMCHP20382 165 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 AMTP48728 403 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 CSNK1G2-AS1Q8NCQ2 148 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 NDUFAF3Q9BU61 184 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 CSTL1Q9H114 145 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 SMKR1H3BMG3 65 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 NCR2O95944 276 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 PPP1R17O96001 155 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 LINC00315P59091 139 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 MAP1LC3AQ9H492 121 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 AP5S1Q9NUS5 200 aa11.51□□□□□ -0.57
SYNE1-227ENST00000489156 LINC00518Q8N0U6 118 aa11.5□□□□□ -0.57
SYNE1-227ENST00000489156 NBEAL2Q6ZNJ1 2754 aa11.49□□□□□ -0.57
SYNE1-227ENST00000489156 FA2HQ7L5A8 372 aa11.49□□□□□ -0.57
SYNE1-227ENST00000489156 NRACQ8N912 160 aa11.49□□□□□ -0.57
SYNE1-227ENST00000489156 TMEM263Q8WUH6 116 aaKnown RBP11.49□□□□□ -0.57
SYNE1-227ENST00000489156 NXT2Q9NPJ8 142 aaKnown RBP11.49□□□□□ -0.57
SYNE1-227ENST00000489156 IGHV3OR16-12A0A075B7B8 117 aa11.49□□□□□ -0.57
SYNE1-227ENST00000489156 PRM2P04554 102 aa11.49□□□□□ -0.57
SYNE1-227ENST00000489156 IFI27P40305 119 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-227ENST00000489156 ZNF705AQ6ZN79 300 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-227ENST00000489156 RNASE8Q8TDE3 154 aaKnown RBP11.49□□□□□ -0.57
SYNE1-227ENST00000489156 JPT2Q9H910 190 aa11.49□□□□□ -0.57
SYNE1-227ENST00000489156 TRAV26-2A0A0B4J265 109 aa11.48□□□□□ -0.57
SYNE1-227ENST00000489156 A8MWV9 139 aa11.48□□□□□ -0.57
SYNE1-227ENST00000489156 GAS8-AS1O95177 125 aa11.48□□□□□ -0.57
SYNE1-227ENST00000489156 CRYGDP07320 174 aa11.48□□□□□ -0.57
SYNE1-227ENST00000489156 MGPP08493 103 aa11.48□□□□□ -0.57
SYNE1-227ENST00000489156 FAM19A2Q8N3H0 131 aa11.48□□□□□ -0.57
SYNE1-227ENST00000489156 KIR2DL5BA0A0G2JN68 375 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 KIR2DL5BA0A0G2JPC4 375 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 LOC389332A0A1B0GUA5 103 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 GATA1P15976 413 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-227ENST00000489156 AZU1P20160 251 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 APOC4P55056 127 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 KIR2DL5AQ8N109 375 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 KIR2DL5BQ8NHK3 375 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 RASL10AQ92737 203 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 C20orf78Q9BR46 151 aa11.47□□□□□ -0.57
SYNE1-227ENST00000489156 A0A087WWL8 130 aa11.46□□□□□ -0.57
SYNE1-227ENST00000489156 LINC01546A6NGU7 62 aa11.46□□□□□ -0.57
SYNE1-227ENST00000489156 PYY3Q5JQD4 70 aa11.46□□□□□ -0.57
SYNE1-227ENST00000489156 IL17DQ8TAD2 202 aa11.46□□□□□ -0.57
SYNE1-227ENST00000489156 C16orf74Q96GX8 76 aa11.46□□□□□ -0.57
SYNE1-227ENST00000489156 JOSD1Q15040 202 aaPredicted RBP11.46□□□□□ -0.58
SYNE1-227ENST00000489156 SBSPONQ8IVN8 264 aa11.46□□□□□ -0.58
SYNE1-227ENST00000489156 C12orf57Q99622 126 aa11.46□□□□□ -0.58
SYNE1-227ENST00000489156 IGHV1-24A0A0C4DH33 117 aa11.45□□□□□ -0.58
SYNE1-227ENST00000489156 FAM74A4Q5TZK3 123 aa11.45□□□□□ -0.58
SYNE1-227ENST00000489156 Q6ZWC4 215 aa11.45□□□□□ -0.58
SYNE1-227ENST00000489156 Q8N8P6 123 aa11.45□□□□□ -0.58
SYNE1-227ENST00000489156 F5H697 171 aa11.44□□□□□ -0.58
SYNE1-227ENST00000489156 DAZ2Q13117 558 aaKnown RBP11.44□□□□□ -0.58
SYNE1-227ENST00000489156 RRN3P1Q2M238 152 aa11.44□□□□□ -0.58
SYNE1-227ENST00000489156 LGALS9BQ3B8N2 356 aa11.44□□□□□ -0.58
SYNE1-227ENST00000489156 SUMO2P61956 95 aaKnown RBP11.44□□□□□ -0.58
SYNE1-227ENST00000489156 EDA2RQ9HAV5 297 aa11.44□□□□□ -0.58
SYNE1-227ENST00000489156 PRKDCP78527 4128 aaKnown RBP11.44□□□□□ -0.58
SYNE1-227ENST00000489156 IGLV2-18A0A075B6J9 118 aa11.43□□□□□ -0.58
SYNE1-227ENST00000489156 K7EMI3 77 aa11.43□□□□□ -0.58
SYNE1-227ENST00000489156 DEFB135Q30KP9 77 aa11.43□□□□□ -0.58
SYNE1-227ENST00000489156 SUMO4Q6EEV6 95 aa11.43□□□□□ -0.58
SYNE1-227ENST00000489156 RHODO00212 210 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 RPL32P62910 135 aaKnown RBP11.42□□□□□ -0.58
SYNE1-227ENST00000489156 ZNF56Q15929 161 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 UFSP1Q6NVU6 142 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 SMIM9A6NGZ8 99 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 M0QY20 66 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 LEPROTL1O95214 131 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 CFAP126Q5VTH2 177 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 SMIM2Q9BVW6 85 aa11.42□□□□□ -0.58
SYNE1-227ENST00000489156 FBN3Q75N90 2809 aa11.41□□□□□ -0.58
SYNE1-227ENST00000489156 TRBV6-5A0A0K0K1A5 114 aa11.41□□□□□ -0.58
SYNE1-227ENST00000489156 H7C1H1 209 aa11.41□□□□□ -0.58
SYNE1-227ENST00000489156 PMCHL1Q16048 86 aa11.41□□□□□ -0.58
SYNE1-227ENST00000489156 ZFP2Q6ZN57 461 aa11.41□□□□□ -0.58
SYNE1-227ENST00000489156 RPL39LQ96EH5 51 aaKnown RBP11.41□□□□□ -0.58
SYNE1-227ENST00000489156 PLAC8L1A1L4L8 177 aa11.4□□□□□ -0.58
SYNE1-227ENST00000489156 RS1O15537 224 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms