RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 DPH3Q96FX2 82 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 TMEM14BQ9NUH8 114 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 TMEM242Q9NWH2 141 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 BCORL1Q5H9F3 1711 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 NDUFB6O95139 128 aa1.16□□□□□ -2.22
UPF3B-203ENST00000478840 IFNA17P01571 189 aa1.16□□□□□ -2.22
UPF3B-203ENST00000478840 SPINT3P49223 89 aa1.16□□□□□ -2.22
UPF3B-203ENST00000478840 RPL7L1Q6DKI1 246 aaKnown RBP1.16□□□□□ -2.22
UPF3B-203ENST00000478840 CYP2G1PQ6ZSU1 146 aa1.16□□□□□ -2.22
UPF3B-203ENST00000478840 SNRNP25Q9BV90 132 aaKnown RBP1.16□□□□□ -2.22
UPF3B-203ENST00000478840 NAIPQ13075 1403 aa1.15□□□□□ -2.22
UPF3B-203ENST00000478840 GNG7O60262 68 aa1.15□□□□□ -2.23
UPF3B-203ENST00000478840 APODP05090 189 aa1.15□□□□□ -2.23
UPF3B-203ENST00000478840 RPL37P61927 97 aaKnown RBP1.15□□□□□ -2.23
UPF3B-203ENST00000478840 C9orf116Q5BN46 136 aaPredicted RBP1.15□□□□□ -2.23
UPF3B-203ENST00000478840 RPRMQ9NS64 109 aa1.15□□□□□ -2.23
UPF3B-203ENST00000478840 PHLPP1O60346 1717 aa1.15□□□□□ -2.23
UPF3B-203ENST00000478840 MUC22E2RYF6 1773 aaPredicted RBP1.14□□□□□ -2.23
UPF3B-203ENST00000478840 A0A096LNT2 108 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 PIGBOS1A0A0B4J2F0 54 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 A0A0D9SG42 100 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 RBAKDNA6NC62 111 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 MCRIP1C9JLW8 97 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 SNCGO76070 127 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 LY6G6CO95867 125 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 NPC2P61916 151 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 SSBP1Q04837 148 aaKnown RBP1.14□□□□□ -2.23
UPF3B-203ENST00000478840 ESPL1Q14674 2120 aa1.14□□□□□ -2.23
UPF3B-203ENST00000478840 MAP2P11137 1827 aaKnown RBP1.13□□□□□ -2.23
UPF3B-203ENST00000478840 IBTKQ9P2D0 1353 aaPredicted RBP1.13□□□□□ -2.23
UPF3B-203ENST00000478840 TRAV12-3A0A0B4J271 114 aa1.13□□□□□ -2.23
UPF3B-203ENST00000478840 ZNF137PP52743 207 aa1.13□□□□□ -2.23
UPF3B-203ENST00000478840 BTG2P78543 158 aa1.13□□□□□ -2.23
UPF3B-203ENST00000478840 PDCD10Q9BUL8 212 aa1.13□□□□□ -2.23
UPF3B-203ENST00000478840 ABCA4P78363 2273 aa1.13□□□□□ -2.23
UPF3B-203ENST00000478840 PLXNA1Q9UIW2 1896 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 CCL3L1P16619 93 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 FGF7P21781 194 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 CBLN1P23435 193 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 ELOF1P60002 83 aaKnown RBP1.12□□□□□ -2.23
UPF3B-203ENST00000478840 DSCR8Q96T75 97 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 RERGLQ9H628 205 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 FOCADQ5VW36 1801 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 BCL9LQ86UU0 1499 aa1.12□□□□□ -2.23
UPF3B-203ENST00000478840 ZNF469Q96JG9 3925 aaPredicted RBP1.11□□□□□ -2.23
UPF3B-203ENST00000478840 FAM74A4Q5TZK3 123 aa1.11□□□□□ -2.23
UPF3B-203ENST00000478840 C12orf73Q69YU5 71 aa1.11□□□□□ -2.23
UPF3B-203ENST00000478840 C4orf33Q8N1A6 199 aa1.11□□□□□ -2.23
UPF3B-203ENST00000478840 AGPAT4-IT1Q9H0P7 198 aa1.11□□□□□ -2.23
UPF3B-203ENST00000478840 NAA60Q9H7X0 242 aa1.11□□□□□ -2.23
UPF3B-203ENST00000478840 ZNF518AQ6AHZ1 1483 aa1.11□□□□□ -2.23
UPF3B-203ENST00000478840 KIAA0100Q14667 2235 aaKnown RBP1.11□□□□□ -2.23
UPF3B-203ENST00000478840 ASH1LQ9NR48 2969 aaKnown RBP1.11□□□□□ -2.23
UPF3B-203ENST00000478840 UBE2G1P62253 170 aa1.1□□□□□ -2.23
UPF3B-203ENST00000478840 MEIG1Q5JSS6 88 aa1.1□□□□□ -2.23
UPF3B-203ENST00000478840 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.1□□□□□ -2.23
UPF3B-203ENST00000478840 C10orf95Q9H7T3 257 aa1.1□□□□□ -2.23
UPF3B-203ENST00000478840 KNTC1P50748 2209 aa1.09□□□□□ -2.23
UPF3B-203ENST00000478840 C6orf52Q5T4I8 152 aa1.09□□□□□ -2.23
UPF3B-203ENST00000478840 SEC11CQ9BY50 192 aa1.09□□□□□ -2.23
UPF3B-203ENST00000478840 SERP1Q9Y6X1 66 aa1.09□□□□□ -2.23
UPF3B-203ENST00000478840 CFTRP13569 1480 aa1.09□□□□□ -2.24
UPF3B-203ENST00000478840 A0A087WTM6 91 aa1.08□□□□□ -2.24
UPF3B-203ENST00000478840 HIST1H1DP16402 221 aaKnown RBP1.08□□□□□ -2.24
UPF3B-203ENST00000478840 ZNF818PQ6ZRF7 136 aa1.08□□□□□ -2.24
UPF3B-203ENST00000478840 COX7B2Q8TF08 81 aa1.08□□□□□ -2.24
UPF3B-203ENST00000478840 NRXN2Q9P2S2 1712 aa1.08□□□□□ -2.24
UPF3B-203ENST00000478840 FBN2P35556 2912 aa1.08□□□□□ -2.24
UPF3B-203ENST00000478840 SPEF2Q9C093 1822 aa1.08□□□□□ -2.24
UPF3B-203ENST00000478840 KDM6BO15054 1643 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 MBD5Q9P267 1494 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 LOC285556D6RIA3 1793 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 TRBV10-3A0A0K0K1G6 114 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 C20orf197Q8N268 126 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 C10orf82Q8WW14 230 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 PHIPQ8WWQ0 1821 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 ZNF462Q96JM2 2506 aa1.07□□□□□ -2.24
UPF3B-203ENST00000478840 WDR7Q9Y4E6 1490 aa1.06□□□□□ -2.24
UPF3B-203ENST00000478840 DLEU1O43261 78 aa1.06□□□□□ -2.24
UPF3B-203ENST00000478840 CCL8P80075 99 aa1.06□□□□□ -2.24
UPF3B-203ENST00000478840 Q6AWC8 147 aa1.06□□□□□ -2.24
UPF3B-203ENST00000478840 NOTCH1P46531 2555 aa1.06□□□□□ -2.24
UPF3B-203ENST00000478840 ROCK2O75116 1388 aaKnown RBP1.06□□□□□ -2.24
UPF3B-203ENST00000478840 IFT140Q96RY7 1462 aa1.05□□□□□ -2.24
UPF3B-203ENST00000478840 UBE2D1P51668 147 aa1.05□□□□□ -2.24
UPF3B-203ENST00000478840 Q56UQ5 140 aa1.05□□□□□ -2.24
UPF3B-203ENST00000478840 KRTAP19-3Q7Z4W3 81 aa1.05□□□□□ -2.24
UPF3B-203ENST00000478840 V9GYV3 84 aa1.05□□□□□ -2.24
UPF3B-203ENST00000478840 TANC1Q9C0D5 1861 aa1.04□□□□□ -2.24
UPF3B-203ENST00000478840 TRBV7-1A0A0A6YYK4 115 aa1.04□□□□□ -2.24
UPF3B-203ENST00000478840 AKAIN1P0CW23 69 aa1.04□□□□□ -2.24
UPF3B-203ENST00000478840 TMEM203Q969S6 136 aa1.04□□□□□ -2.24
UPF3B-203ENST00000478840 MYH7P12883 1935 aa1.04□□□□□ -2.24
UPF3B-203ENST00000478840 SMG6Q86US8 1419 aaKnown RBP1.04□□□□□ -2.24
UPF3B-203ENST00000478840 SPTSSBQ8NFR3 76 aa1.03□□□□□ -2.24
UPF3B-203ENST00000478840 PP6455Q8WZ26 134 aa1.03□□□□□ -2.24
UPF3B-203ENST00000478840 C2orf88Q9BSF0 95 aa1.03□□□□□ -2.24
UPF3B-203ENST00000478840 SPANXDQ9BXN6 97 aa1.03□□□□□ -2.24
UPF3B-203ENST00000478840 SCP2D1Q9UJQ7 156 aa1.03□□□□□ -2.24
UPF3B-203ENST00000478840 PARP14Q460N5 1801 aa1.03□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms