RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 IGKV3-20P01619 116 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 MUC21Q5SSG8 566 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 AMN1Q8IY45 258 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 AP1S3Q96PC3 154 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 HIST1H2BLQ99880 126 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 MSRB1Q9NZV6 116 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 MUC4Q99102 2169 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 KIR2DL5BA0A0G2JN68 375 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 KIR2DL5BA0A0G2JPC4 375 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 LINC00614P0C842 121 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 SMIM6P0DI80 62 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 CKS2P33552 79 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 LINC00310P59036 64 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 KIR2DL5AQ8N109 375 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 KIR2DL5BQ8NHK3 375 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 PRELID3AQ96N28 172 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 KIF25-AS1Q9Y6Z4 181 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 CSMD3Q7Z407 3707 aa8.54□□□□□ -1.04
USP54-209ENST00000464635 CIDEAO60543 219 aa8.53□□□□□ -1.04
USP54-209ENST00000464635 SERF1AO75920 110 aa8.53□□□□□ -1.04
USP54-209ENST00000464635 EVI2AP22794 236 aa8.53□□□□□ -1.04
USP54-209ENST00000464635 RPL32P62910 135 aaKnown RBP8.53□□□□□ -1.04
USP54-209ENST00000464635 ZNF415Q09FC8 603 aa8.53□□□□□ -1.04
USP54-209ENST00000464635 NIT1Q86X76 327 aa8.53□□□□□ -1.04
USP54-209ENST00000464635 C20orf78Q9BR46 151 aa8.53□□□□□ -1.04
USP54-209ENST00000464635 LCE6AA0A183 80 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 CBY3A6NI87 242 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 D6R8Y8 96 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 M0R2P5 195 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 RBMY1A1P0DJD3 496 aaKnown RBP8.52□□□□□ -1.05
USP54-209ENST00000464635 RBMY1CP0DJD4 496 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 RBMY1FQ15415 496 aaKnown RBP8.52□□□□□ -1.05
USP54-209ENST00000464635 ZNF124Q15973 351 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 C1orf158Q8N1D5 194 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 CSNK1G2-AS1Q8NCQ2 148 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 LINC01587Q99440 93 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 NXT2Q9NPJ8 142 aaKnown RBP8.52□□□□□ -1.05
USP54-209ENST00000464635 MDFICQ9P1T7 246 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 GOLT1BQ9Y3E0 138 aa8.52□□□□□ -1.05
USP54-209ENST00000464635 A8MWV9 139 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 NUPR1O60356 82 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 GIG44P09565 113 aaPredicted RBP8.51□□□□□ -1.05
USP54-209ENST00000464635 SMIM17P0DL12 118 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 FABP4P15090 132 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 LINC00315P59091 139 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 LGALS9BQ3B8N2 356 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 ZNF705AQ6ZN79 300 aaPredicted RBP8.51□□□□□ -1.05
USP54-209ENST00000464635 C11orf72Q8NBR9 251 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 RASL10AQ92737 203 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 CSTL1Q9H114 145 aa8.51□□□□□ -1.05
USP54-209ENST00000464635 SMIM9A6NGZ8 99 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 LINC01549A6NIU2 74 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 HSBP1O75506 76 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 AKR1D1P51857 326 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 DAZ2Q13117 558 aaKnown RBP8.5□□□□□ -1.05
USP54-209ENST00000464635 JOSD1Q15040 202 aaPredicted RBP8.5□□□□□ -1.05
USP54-209ENST00000464635 LINC00518Q8N0U6 118 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 PRSS3P2Q8NHM4 247 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 IL17DQ8TAD2 202 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 TMEM263Q8WUH6 116 aaKnown RBP8.5□□□□□ -1.05
USP54-209ENST00000464635 SAMD10Q9BYL1 202 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 MAP1LC3AQ9H492 121 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 AP5S1Q9NUS5 200 aa8.5□□□□□ -1.05
USP54-209ENST00000464635 MUC21A0A0G2JKD1 596 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 TRBV6-5A0A0K0K1A5 114 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 MUC21A0A140T8X8 626 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 TNFRSF6BO95407 300 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 CRYGDP07320 174 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 ZNF876PQ49A33 203 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 ZFP2Q6ZN57 461 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 NRACQ8N912 160 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 OR10D4PQ8NGN7 298 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 URB1-AS1Q96HZ7 61 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 XCL2Q9UBD3 114 aa8.49□□□□□ -1.05
USP54-209ENST00000464635 DNAH1Q9P2D7 4330 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 HYDINQ4G0P3 5121 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 RHODO00212 210 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 TCAPO15273 167 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 G0S2P27469 103 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 AMTP48728 403 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 FXYD7P58549 80 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 FA2HQ7L5A8 372 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 C14orf178Q8N769 122 aaPredicted RBP8.48□□□□□ -1.05
USP54-209ENST00000464635 Q8N8P6 123 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 RNASE8Q8TDE3 154 aaKnown RBP8.48□□□□□ -1.05
USP54-209ENST00000464635 C16orf74Q96GX8 76 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 OVOL2Q9BRP0 275 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 TMEM208Q9BTX3 173 aa8.48□□□□□ -1.05
USP54-209ENST00000464635 PLECQ15149 4684 aaKnown RBP8.48□□□□□ -1.05
USP54-209ENST00000464635 LYSTQ99698 3801 aa8.47□□□□□ -1.05
USP54-209ENST00000464635 IGLV2-18A0A075B6J9 118 aa8.47□□□□□ -1.05
USP54-209ENST00000464635 H7C1H1 209 aa8.47□□□□□ -1.05
USP54-209ENST00000464635 NPYP01303 97 aa8.47□□□□□ -1.05
USP54-209ENST00000464635 APOC4P55056 127 aa8.47□□□□□ -1.05
USP54-209ENST00000464635 IQCJQ1A5X6 159 aa8.47□□□□□ -1.05
USP54-209ENST00000464635 PDZD11Q5EBL8 140 aa8.47□□□□□ -1.05
USP54-209ENST00000464635 EPPK1P58107 5090 aaKnown RBP8.46□□□□□ -1.05
USP54-209ENST00000464635 SPRY2O43597 315 aa8.46□□□□□ -1.06
USP54-209ENST00000464635 IFI27P40305 119 aaPredicted RBP8.46□□□□□ -1.06
USP54-209ENST00000464635 SSTP61278 116 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms