RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 PIEZO1Q92508 2521 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 CCL24O00175 119 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 DEFB1P60022 68 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 NRGNQ92686 78 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 NCOR2Q9Y618 2525 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 F5H768 121 aa11.33□□□□□ -0.59
PTPRU-205ENST00000460170 MED14OSP0DP75 135 aa11.33□□□□□ -0.6
PTPRU-205ENST00000460170 APRG1Q8IVJ8 170 aa11.33□□□□□ -0.6
PTPRU-205ENST00000460170 ZNF80P51504 273 aaPredicted RBP11.33□□□□□ -0.6
PTPRU-205ENST00000460170 LAMTOR3Q9UHA4 124 aa11.33□□□□□ -0.6
PTPRU-205ENST00000460170 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.33□□□□□ -0.6
PTPRU-205ENST00000460170 IGKV2-29A2NJV5 120 aaPredicted RBP11.33□□□□□ -0.6
PTPRU-205ENST00000460170 CCDC140Q96MF4 163 aa11.33□□□□□ -0.6
PTPRU-205ENST00000460170 TTTY13Q9BZ97 58 aa11.33□□□□□ -0.6
PTPRU-205ENST00000460170 IGHV4OR15-8A0A075B7B6 117 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 A0A087WW49 117 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 TRBV12-3P01733 135 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 Q8N1Y9 231 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 NOP10Q9NPE3 64 aaKnown RBP11.32□□□□□ -0.6
PTPRU-205ENST00000460170 SPANXA1Q9NS26 97 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 J3QKU1 62 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 RNF152Q8N8N0 203 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 DNAJC30Q96LL9 226 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 CITED2Q99967 270 aaPredicted RBP11.32□□□□□ -0.6
PTPRU-205ENST00000460170 KIAA1549Q9HCM3 1950 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 TRAV12-1A0A0B4J245 112 aa11.32□□□□□ -0.6
PTPRU-205ENST00000460170 LINC01548A6NM66 108 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 EDA2RQ9HAV5 297 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 GAGE2AQ6NT46 116 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 SPATA12Q7Z6I5 190 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 HIGD1BQ9P298 99 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 HCFC1P51610 2035 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 A6NDX4 124 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 CFC1BP0CG36 223 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 CFC1P0CG37 223 aa11.31□□□□□ -0.6
PTPRU-205ENST00000460170 TMEM89A2RUT3 159 aa11.3□□□□□ -0.6
PTPRU-205ENST00000460170 LY6LH3BQJ8 138 aa11.3□□□□□ -0.6
PTPRU-205ENST00000460170 ODF1Q14990 250 aa11.3□□□□□ -0.6
PTPRU-205ENST00000460170 NACAE9PAV3 2078 aa11.3□□□□□ -0.6
PTPRU-205ENST00000460170 A0A0J9YXV3 536 aa11.3□□□□□ -0.6
PTPRU-205ENST00000460170 IGLL5B9A064 214 aa11.3□□□□□ -0.6
PTPRU-205ENST00000460170 INAFM2P0DMQ5 153 aa11.3□□□□□ -0.6
PTPRU-205ENST00000460170 LOXL1Q08397 574 aaPredicted RBP11.3□□□□□ -0.6
PTPRU-205ENST00000460170 PRB1P04280 392 aa11.29□□□□□ -0.6
PTPRU-205ENST00000460170 FXYD2P54710 66 aa11.29□□□□□ -0.6
PTPRU-205ENST00000460170 TOMM6Q96B49 74 aa11.29□□□□□ -0.6
PTPRU-205ENST00000460170 RPL39P62891 51 aaKnown RBP11.29□□□□□ -0.6
PTPRU-205ENST00000460170 TAX1BP3O14907 124 aa11.29□□□□□ -0.6
PTPRU-205ENST00000460170 HIST1H4AP62805 103 aaKnown RBP11.29□□□□□ -0.6
PTPRU-205ENST00000460170 GAGE12HA6NDE8 117 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 APOC4P55056 127 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 IGLC6P0CF74 106 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 MYCNOSP40205 109 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 EBI3Q14213 229 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 BAALCQ8WXS3 180 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 TP53TG3Q9ULZ0 132 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 NAV2Q8IVL1 2488 aa11.28□□□□□ -0.6
PTPRU-205ENST00000460170 SONP18583 2426 aaKnown RBP11.27□□□□□ -0.6
PTPRU-205ENST00000460170 Q9H8V8 135 aa11.27□□□□□ -0.61
PTPRU-205ENST00000460170 NXPH4O95158 308 aa11.27□□□□□ -0.61
PTPRU-205ENST00000460170 TIMM17AQ99595 171 aa11.27□□□□□ -0.61
PTPRU-205ENST00000460170 C3orf56Q8N813 242 aa11.27□□□□□ -0.61
PTPRU-205ENST00000460170 HIVEP2P31629 2446 aa11.26□□□□□ -0.61
PTPRU-205ENST00000460170 TRAV13-2A0A0B4J235 113 aa11.26□□□□□ -0.61
PTPRU-205ENST00000460170 A0A0J9YX75 114 aa11.26□□□□□ -0.61
PTPRU-205ENST00000460170 E9PLD3 99 aa11.26□□□□□ -0.61
PTPRU-205ENST00000460170 Q71RC1 249 aaPredicted RBP11.26□□□□□ -0.61
PTPRU-205ENST00000460170 CARD19Q96LW7 228 aa11.26□□□□□ -0.61
PTPRU-205ENST00000460170 TNFRSF13BO14836 293 aaPredicted RBP11.26□□□□□ -0.61
PTPRU-205ENST00000460170 ATG2AQ2TAZ0 1938 aa11.26□□□□□ -0.61
PTPRU-205ENST00000460170 PRSS47A8MTI9 375 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 DEFB121Q5J5C9 76 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 DSCAMO60469 2012 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 A0A096LPF7 62 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 CCDC168Q8NDH2 2452 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 NAV3Q8IVL0 2385 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 ZNF561-AS1K7EIQ3 104 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 IGF1P05019 195 aa11.25□□□□□ -0.61
PTPRU-205ENST00000460170 C19orf84I3L1E1 186 aa11.24□□□□□ -0.61
PTPRU-205ENST00000460170 MDFICQ9P1T7 246 aa11.24□□□□□ -0.61
PTPRU-205ENST00000460170 ANGP03950 147 aaKnown RBP11.24□□□□□ -0.61
PTPRU-205ENST00000460170 NTN5Q8WTR8 489 aaPredicted RBP11.24□□□□□ -0.61
PTPRU-205ENST00000460170 A4D1N5 150 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 C11orf86A6NJI1 115 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 SOCS3O14543 225 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 TANC2Q9HCD6 1990 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 TEX48A0A1B0GUV7 120 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 CRIP1P50238 77 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 C9orf153Q5TBE3 101 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 SLC25A29Q8N8R3 303 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 C11orf71Q6IPW1 123 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 C2CD3Q4AC94 2353 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 IFITM1P13164 125 aa11.23□□□□□ -0.61
PTPRU-205ENST00000460170 SH2D6Q7Z4S9 175 aa11.22□□□□□ -0.61
PTPRU-205ENST00000460170 ZFAND3Q9H8U3 227 aa11.22□□□□□ -0.61
PTPRU-205ENST00000460170 MYO18BQ8IUG5 2567 aa11.22□□□□□ -0.61
PTPRU-205ENST00000460170 IGHG4P01861 327 aa11.22□□□□□ -0.61
PTPRU-205ENST00000460170 MUSTN1Q8IVN3 82 aa11.22□□□□□ -0.61
PTPRU-205ENST00000460170 TMEM61Q8N0U2 210 aa11.22□□□□□ -0.61
PTPRU-205ENST00000460170 K7EQD1 137 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms