RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 MORN2Q502X0 79 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 C9orf116Q5BN46 136 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 OR5H6Q8NGV6 325 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF431Q8TF32 576 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 HOPXQ9BPY8 73 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 TAS2R4Q9NYW5 299 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 PSG8Q9UQ74 426 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 LSM5Q9Y4Y9 91 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 TRAV2A0A0B4J234 112 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 LOC389332A0A1B0GUA5 103 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 SLC25A6P12236 298 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 IFI27P40305 119 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 RHEBQ15382 184 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ODF3L2Q3SX64 289 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ANKRD39Q53RE8 183 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 Q6ZRN7 208 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 KLHDC8BQ8IXV7 354 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 C11orf72Q8NBR9 251 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 MAFIPQ8WZ33 124 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 MRPL53Q96EL3 112 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 DCSTAMPQ9H295 470 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 CELA1Q9UNI1 258 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 LSM2Q9Y333 95 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 EML6Q6ZMW3 1958 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 PET100P0DJ07 73 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 KRTAP10-1P60331 282 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 LSM3P62310 102 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 ENDOGQ14249 297 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 LCE4AQ5TA78 99 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 ANKRD29Q8N6D5 301 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 SUN5Q8TC36 379 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 COPS9Q8WXC6 57 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 SHPKQ9UHJ6 478 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 U3KQ87 197 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 FBN1P35555 2871 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 TMEM213A2RRL7 107 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 TRBV12-3P01733 135 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 RAB4AP20338 218 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 SURF2Q15527 256 aaPredicted RBP1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 TMEM241Q24JQ0 296 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 TEX261Q6UWH6 196 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 C5orf38Q86SI9 138 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 OR4D5Q8NGN0 318 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 IFT22Q9H7X7 185 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 NHP2Q9NX24 153 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF492Q9P255 531 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 B4DEV8 164 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 FSTL3O95633 263 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 RAB14P61106 215 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 C2orf83Q53S99 150 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 C1orf194Q5T5A4 169 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 FLVCR1-AS1Q8TAF5 88 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 TAS2R5Q9NYW4 299 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 MYO5AQ9Y4I1 1855 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 CEP192Q8TEP8 1941 aa1.86□□□□□ -2.11
CCDC88A-205ENST00000426576 PFN2P35080 140 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 CNIH2Q6PI25 160 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 UQCC3Q6UW78 93 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 LYPD5Q6UWN5 251 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 FAM231DQ6ZW35 169 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 DEDD2Q8WXF8 326 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 NPCDR1Q9BY65 106 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 PCNX3Q9H6A9 2034 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 E7ESA3 106 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 H0Y9J4 135 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 KRTAP10-2P60368 255 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 HERVK_113P61574 105 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 TMEM128Q5BJH2 165 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 SVIPQ8NHG7 77 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 RNF133Q8WVZ7 376 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 C4orf36Q96KX1 117 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 GNB1LQ9BYB4 327 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 NIT2Q9NQR4 276 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 A0A0U1RRA0 63 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 A6NJY4 79 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 CD37P11049 281 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 FAM19A3Q7Z5A8 133 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 EIF1ADQ8N9N8 165 aaKnown RBP1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 PARLQ9H300 379 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 VCX2Q9H322 139 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 LCTP09848 1927 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 NUP210Q8TEM1 1887 aaPredicted RBP1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 PLXND1Q9Y4D7 1925 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 TRAV4A0A0B4J268 109 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 KRTAP9-7A8MTY7 169 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 M0R3E3 92 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 VPREB1P12018 145 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 ATP5IP56385 69 aaPredicted RBP1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 SPCS3P61009 180 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 SELENOWP63302 87 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 RPL22L1Q6P5R6 122 aaKnown RBP1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 SYS1Q8N2H4 156 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 RNASEH2CQ8TDP1 164 aaKnown RBP1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 PSENENQ9NZ42 101 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 ZFP30Q9Y2G7 519 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 V9GY05 133 aa1.85□□□□□ -2.11
CCDC88A-205ENST00000426576 IBA57-AS1B1ANH7 110 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF253O75346 499 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 NAPSAO96009 420 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 HOXB5P09067 269 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms