RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TNFRSF13BO14836 293 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-203ENST00000409050 SS18L2Q9UHA2 77 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 IGHV3-30-3P0DP02 117 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 RPL18AQ02543 176 aaKnown RBP4.68□□□□□ -1.66
SCN1A-203ENST00000409050 C5orf47Q569G3 176 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 FNDC1Q4ZHG4 1894 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-203ENST00000409050 FAM236DA0A1B0GTK5 79 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 FAM236CP0DP71 79 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 ESPL1Q14674 2120 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 DAND5Q8N907 189 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 A6NDX4 124 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 IGF1P05019 195 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 WFDC2Q14508 124 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 MLST8Q9BVC4 326 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 SIRPDQ9H106 197 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 C3orf22Q8N5N4 141 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 MBD6Q96DN6 1003 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 TNRC6AQ8NDV7 1962 aaKnown RBP4.67□□□□□ -1.66
SCN1A-203ENST00000409050 NDUFV3P56181 108 aaKnown RBP4.67□□□□□ -1.66
SCN1A-203ENST00000409050 EBI3Q14213 229 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 CLPSL1A2RUU4 121 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 MIR7-3HGQ8N6C7 128 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 NEXN-AS1Q8NBZ9 246 aa4.67□□□□□ -1.66
SCN1A-203ENST00000409050 CACNA1DQ01668 2161 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 IGHV4-59P01825 116 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 DIAPH2-AS1Q14236 149 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 CCDC140Q96MF4 163 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 ZNF706Q9Y5V0 76 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-203ENST00000409050 SVILO95425 2214 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 ODF3BA8MYP8 253 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 CLUHP3Q96NS8 147 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 F8WDY8 70 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 ODF3L1Q8IXM7 274 aa4.66□□□□□ -1.66
SCN1A-203ENST00000409050 LY6HO94772 140 aa4.65□□□□□ -1.66
SCN1A-203ENST00000409050 ZFAND2AQ8N6M9 145 aa4.65□□□□□ -1.66
SCN1A-203ENST00000409050 TET1Q8NFU7 2136 aa4.65□□□□□ -1.66
SCN1A-203ENST00000409050 IGKV3D-7A0A0C4DH55 119 aa4.65□□□□□ -1.66
SCN1A-203ENST00000409050 TRBV6-4A0A1B0GX49 114 aa4.65□□□□□ -1.66
SCN1A-203ENST00000409050 DHRS4-AS1Q9P1J3 65 aa4.65□□□□□ -1.66
SCN1A-203ENST00000409050 GATA1P15976 413 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-203ENST00000409050 COX17Q14061 63 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 NUP210Q8TEM1 1887 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-203ENST00000409050 CACNA1IQ9P0X4 2223 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 TMEM223A0PJW6 202 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 PRR31Q5SQ13 230 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 SPTSSBQ8NFR3 76 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 ZNF524Q96C55 264 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 VWA8A3KMH1 1905 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 SCN5AQ14524 2016 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 SERP2Q8N6R1 65 aa4.65□□□□□ -1.67
SCN1A-203ENST00000409050 RNASE8Q8TDE3 154 aaKnown RBP4.65□□□□□ -1.67
SCN1A-203ENST00000409050 ASXL3Q9C0F0 2248 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 Q6ZQT7 251 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 SVIPQ8NHG7 77 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 TANC1Q9C0D5 1861 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 NUPR1O60356 82 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 DEFB105AQ8NG35 78 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 FANCD2OSQ96PS1 177 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV4-4A0A075B6R2 117 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 NFE4Q86UQ8 179 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 C14orf132Q9NPU4 83 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 PLA2G2EQ9NZK7 142 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 PTPRDP23468 1912 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 RLFQ13129 1914 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 TCL1BO95988 128 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV4OR15-8A0A075B7B6 117 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 A0A087WW49 117 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 IGLV2-14P01704 120 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 IGLV2-8P01709 118 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 DEFB104AQ8WTQ1 72 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 SMAD5-AS1Q9Y6J3 95 aa4.64□□□□□ -1.67
SCN1A-203ENST00000409050 FRMPD3Q5JV73 1810 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 ARHGEF17Q96PE2 2063 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-203ENST00000409050 FAM186AA6NE01 2351 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 IGKV1D-37A0A075B6S9 117 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV4-61A0A0C4DH41 118 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 TRBV27A0A0K0K1C4 114 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 K7EQG2 157 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 LINC00173Q6ZV60 143 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 MSRB1Q9NZV6 116 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 ALPK2Q86TB3 2170 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 RNASE13Q5GAN3 156 aaKnown RBP4.63□□□□□ -1.67
SCN1A-203ENST00000409050 A0A0J9YY99 117 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 LINC01548A6NM66 108 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 USP17L23D6RBM5 183 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 RS1O15537 224 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 MIFP14174 115 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 SLURP1P55000 103 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 NLRC5Q86WI3 1866 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 PRR30Q53SZ7 412 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-203ENST00000409050 Q8N7P7 452 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 CHCHD7Q9BUK0 85 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 ABCA7Q8IZY2 2146 aa4.63□□□□□ -1.67
SCN1A-203ENST00000409050 Q6JHZ5 121 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 MAP6D1Q9H9H5 199 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 RPL39P62891 51 aaKnown RBP4.62□□□□□ -1.67
SCN1A-203ENST00000409050 SELENOKQ9Y6D0 94 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 CDPF1Q6NVV7 123 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 PI4KAP42356 2102 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 KIAA1671Q9BY89 1806 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms