RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 YPEL4Q96NS1 127 aa12.86□□□□□ -0.35
SDC1-203ENST00000403076 A0A1B0GXF2 115 aa12.85□□□□□ -0.35
SDC1-203ENST00000403076 RS1O15537 224 aa12.85□□□□□ -0.35
SDC1-203ENST00000403076 CFAP126Q5VTH2 177 aa12.85□□□□□ -0.35
SDC1-203ENST00000403076 TRAV4A0A0B4J268 109 aa12.84□□□□□ -0.35
SDC1-203ENST00000403076 RASL11AQ6T310 242 aa12.84□□□□□ -0.35
SDC1-203ENST00000403076 FAM210BQ96KR6 192 aa12.84□□□□□ -0.35
SDC1-203ENST00000403076 SAMD10Q9BYL1 202 aa12.84□□□□□ -0.35
SDC1-203ENST00000403076 IGHV3-73A0A0B4J1V6 119 aa12.83□□□□□ -0.35
SDC1-203ENST00000403076 MGPP08493 103 aa12.83□□□□□ -0.35
SDC1-203ENST00000403076 C12orf74Q32Q52 190 aa12.83□□□□□ -0.35
SDC1-203ENST00000403076 TMEM191AQ9H0A3 160 aa12.83□□□□□ -0.35
SDC1-203ENST00000403076 DPH3P1Q9H4G8 78 aa12.83□□□□□ -0.35
SDC1-203ENST00000403076 F5H697 171 aa12.83□□□□□ -0.36
SDC1-203ENST00000403076 NANOS2P60321 138 aaKnown RBP12.83□□□□□ -0.36
SDC1-203ENST00000403076 POM121L12Q8N7R1 296 aa12.83□□□□□ -0.36
SDC1-203ENST00000403076 ZNF479Q96JC4 524 aa12.83□□□□□ -0.36
SDC1-203ENST00000403076 RHODO00212 210 aa12.82□□□□□ -0.36
SDC1-203ENST00000403076 ATP5G1P05496 136 aa12.82□□□□□ -0.36
SDC1-203ENST00000403076 CRYGDP07320 174 aa12.82□□□□□ -0.36
SDC1-203ENST00000403076 COX19Q49B96 90 aa12.82□□□□□ -0.36
SDC1-203ENST00000403076 C18orf15Q96N68 181 aa12.82□□□□□ -0.36
SDC1-203ENST00000403076 TRGV4A0A0C4DH28 118 aa12.81□□□□□ -0.36
SDC1-203ENST00000403076 HTN3P15516 51 aa12.81□□□□□ -0.36
SDC1-203ENST00000403076 ZNF56Q15929 161 aa12.81□□□□□ -0.36
SDC1-203ENST00000403076 CIDEAO60543 219 aa12.8□□□□□ -0.36
SDC1-203ENST00000403076 ZFP2Q6ZN57 461 aa12.8□□□□□ -0.36
SDC1-203ENST00000403076 KIF25-AS1Q9Y6Z4 181 aa12.8□□□□□ -0.36
SDC1-203ENST00000403076 COLCA2A8K830 154 aa12.79□□□□□ -0.36
SDC1-203ENST00000403076 TMEM136Q6ZRR5 245 aa12.79□□□□□ -0.36
SDC1-203ENST00000403076 AMN1Q8IY45 258 aa12.79□□□□□ -0.36
SDC1-203ENST00000403076 GATD1Q8NB37 220 aa12.79□□□□□ -0.36
SDC1-203ENST00000403076 GNB1LQ9BYB4 327 aa12.79□□□□□ -0.36
SDC1-203ENST00000403076 HLA-DQA1P01909 254 aa12.78□□□□□ -0.36
SDC1-203ENST00000403076 FAM104BQ5XKR9 115 aa12.78□□□□□ -0.36
SDC1-203ENST00000403076 Q6ZTC4 211 aa12.78□□□□□ -0.36
SDC1-203ENST00000403076 EDA2RQ9HAV5 297 aa12.78□□□□□ -0.36
SDC1-203ENST00000403076 F5H768 121 aa12.78□□□□□ -0.36
SDC1-203ENST00000403076 UFSP1Q6NVU6 142 aa12.78□□□□□ -0.36
SDC1-203ENST00000403076 FRZBQ92765 325 aa12.78□□□□□ -0.36
SDC1-203ENST00000403076 MT-ND6P03923 174 aa12.77□□□□□ -0.37
SDC1-203ENST00000403076 RAB4AP20338 218 aa12.77□□□□□ -0.37
SDC1-203ENST00000403076 RPS10P46783 165 aaKnown RBP12.77□□□□□ -0.37
SDC1-203ENST00000403076 LINC00315P59091 139 aa12.77□□□□□ -0.37
SDC1-203ENST00000403076 FHL2Q14192 279 aa12.77□□□□□ -0.37
SDC1-203ENST00000403076 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.77□□□□□ -0.37
SDC1-203ENST00000403076 TRAPPC1Q9Y5R8 145 aa12.77□□□□□ -0.37
SDC1-203ENST00000403076 DNAH9Q9NYC9 4486 aa12.76□□□□□ -0.37
SDC1-203ENST00000403076 RNF185Q96GF1 192 aa12.76□□□□□ -0.37
SDC1-203ENST00000403076 NACAE9PAV3 2078 aa12.76□□□□□ -0.37
SDC1-203ENST00000403076 APCSP02743 223 aa12.75□□□□□ -0.37
SDC1-203ENST00000403076 RAB5AP20339 215 aa12.75□□□□□ -0.37
SDC1-203ENST00000403076 HOXA5P20719 270 aa12.75□□□□□ -0.37
SDC1-203ENST00000403076 FABP9Q0Z7S8 132 aa12.75□□□□□ -0.37
SDC1-203ENST00000403076 MRPL51Q4U2R6 128 aaKnown RBP12.75□□□□□ -0.37
SDC1-203ENST00000403076 MRPL18Q9H0U6 180 aaKnown RBP12.75□□□□□ -0.37
SDC1-203ENST00000403076 HUWE1Q7Z6Z7 4374 aaKnown RBP12.75□□□□□ -0.37
SDC1-203ENST00000403076 DEFB131BA0A096LNP1 70 aa12.74□□□□□ -0.37
SDC1-203ENST00000403076 TRAV26-2A0A0B4J265 109 aa12.74□□□□□ -0.37
SDC1-203ENST00000403076 GATA1P15976 413 aaPredicted RBP12.74□□□□□ -0.37
SDC1-203ENST00000403076 SLAQ13239 276 aa12.74□□□□□ -0.37
SDC1-203ENST00000403076 SUMO4Q6EEV6 95 aa12.74□□□□□ -0.37
SDC1-203ENST00000403076 Q6ZSN1 163 aa12.74□□□□□ -0.37
SDC1-203ENST00000403076 HHLA3Q9XRX5 114 aa12.74□□□□□ -0.37
SDC1-203ENST00000403076 PRKDCP78527 4128 aaKnown RBP12.74□□□□□ -0.37
SDC1-203ENST00000403076 TRAV10A0A0B4J240 114 aa12.73□□□□□ -0.37
SDC1-203ENST00000403076 H7C1H1 209 aa12.73□□□□□ -0.37
SDC1-203ENST00000403076 CKS2P33552 79 aa12.73□□□□□ -0.37
SDC1-203ENST00000403076 STAB2Q8WWQ8 2551 aa12.73□□□□□ -0.37
SDC1-203ENST00000403076 KIAA1644Q3SXP7 199 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 MRAP2Q96G30 205 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 PRO0255Q9UI72 69 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 SMKR1H3BMG3 65 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 K7EQD1 137 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 NCR2O95944 276 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 SLC25A29Q8N8R3 303 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 PRADC1Q9BSG0 188 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 COL7A1Q02388 2944 aa12.72□□□□□ -0.37
SDC1-203ENST00000403076 A0A0J9YY99 117 aa12.71□□□□□ -0.38
SDC1-203ENST00000403076 TRBV6-4A0A1B0GX49 114 aa12.71□□□□□ -0.38
SDC1-203ENST00000403076 D6R8Y8 96 aa12.71□□□□□ -0.38
SDC1-203ENST00000403076 PAX4O43316 350 aa12.71□□□□□ -0.38
SDC1-203ENST00000403076 RHOHQ15669 191 aa12.71□□□□□ -0.38
SDC1-203ENST00000403076 M0QY20 66 aa12.7□□□□□ -0.38
SDC1-203ENST00000403076 PPBPP02775 128 aa12.7□□□□□ -0.38
SDC1-203ENST00000403076 CRYBA4P53673 196 aa12.7□□□□□ -0.38
SDC1-203ENST00000403076 PHLDA1Q8WV24 401 aaPredicted RBP12.7□□□□□ -0.38
SDC1-203ENST00000403076 TRAV26-1A0A087WT03 109 aa12.69□□□□□ -0.38
SDC1-203ENST00000403076 P0DMU3 169 aa12.69□□□□□ -0.38
SDC1-203ENST00000403076 FAM231AP0DMU4 169 aa12.69□□□□□ -0.38
SDC1-203ENST00000403076 FAM231CP0DMU5 169 aa12.69□□□□□ -0.38
SDC1-203ENST00000403076 ORMDL3Q8N138 153 aa12.69□□□□□ -0.38
SDC1-203ENST00000403076 GAS8-AS1O95177 125 aa12.68□□□□□ -0.38
SDC1-203ENST00000403076 TRGC2P03986 189 aa12.68□□□□□ -0.38
SDC1-203ENST00000403076 OR10J3Q5JRS4 329 aa12.68□□□□□ -0.38
SDC1-203ENST00000403076 PRELID3AQ96N28 172 aa12.68□□□□□ -0.38
SDC1-203ENST00000403076 NIT2Q9NQR4 276 aa12.68□□□□□ -0.38
SDC1-203ENST00000403076 GYPEP15421 78 aa12.67□□□□□ -0.38
SDC1-203ENST00000403076 RPL39LQ96EH5 51 aaKnown RBP12.67□□□□□ -0.38
SDC1-203ENST00000403076 TNFRSF18Q9Y5U5 241 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms