RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 SNAI2O43623 268 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 HBDP02042 147 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 ORM1P02763 201 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 PRB4P10163 310 aaPredicted RBP3.57□□□□□ -1.84
USP48-202ENST00000374730 CKS2P33552 79 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 CACNG7P62955 275 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 ERCC8Q13216 396 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 LGALS9BQ3B8N2 356 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 LGALS9CQ6DKI2 356 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 APRG1Q8IVJ8 170 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 ATOH7Q8N100 152 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 DEFB125Q8N687 156 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 RNF182Q8N6D2 247 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 RNF185Q96GF1 192 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 AGPAT4-IT1Q9H0P7 198 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 VCX2Q9H322 139 aa3.57□□□□□ -1.84
USP48-202ENST00000374730 ANK3Q12955 4377 aaKnown RBP3.57□□□□□ -1.84
USP48-202ENST00000374730 MAP1AP78559 2803 aaPredicted RBP3.57□□□□□ -1.84
USP48-202ENST00000374730 UTP20O75691 2785 aaKnown RBP3.56□□□□□ -1.84
USP48-202ENST00000374730 IGHV3OR16-13A0A075B7E8 117 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 A0A096LNT2 108 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 IGHV3-74A0A0B4J1X5 117 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 IGHV7-4-1A0A0J9YVY3 117 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 J3QLI3 93 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 K7EMT4 169 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 DLEU1O43261 78 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 ZNF207O43670 478 aaKnown RBP3.56□□□□□ -1.84
USP48-202ENST00000374730 TCF21O43680 179 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 NDUFA7O95182 113 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 NPYP01303 97 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 TRBV12-3P01733 135 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 IFI27P40305 119 aaPredicted RBP3.56□□□□□ -1.84
USP48-202ENST00000374730 ZNF415Q09FC8 603 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 LY6EQ16553 131 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 SAMD13Q5VXD3 122 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 UNQ9165/PRO28630Q6UXU0 137 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 GPHB5Q86YW7 130 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 FAM19A4Q96LR4 140 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 LINC00477Q96M19 166 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 LITAFQ99732 161 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 PMCHL2Q9BQD1 86 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 MAP1LC3AQ9H492 121 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 NXT2Q9NPJ8 142 aaKnown RBP3.56□□□□□ -1.84
USP48-202ENST00000374730 LINC00527Q9UJ94 153 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 CHTOPQ9Y3Y2 248 aaKnown RBP3.56□□□□□ -1.84
USP48-202ENST00000374730 SPG11Q96JI7 2443 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 PRRC2AP48634 2157 aaKnown RBP3.56□□□□□ -1.84
USP48-202ENST00000374730 CR1P17927 2039 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 FBN3Q75N90 2809 aa3.56□□□□□ -1.84
USP48-202ENST00000374730 IGLV5-45A0A087WSX0 123 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 IGHV3-49A0A0A0MS15 119 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 TRAV21A0A0B4J279 112 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 LOC389332A0A1B0GUA5 103 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 SMKR1H3BMG3 65 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 NCR2O95944 276 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 ZNF25P17030 456 aaPredicted RBP3.55□□□□□ -1.84
USP48-202ENST00000374730 RPL24P83731 157 aaKnown RBP3.55□□□□□ -1.84
USP48-202ENST00000374730 LOXL1Q08397 574 aaPredicted RBP3.55□□□□□ -1.84
USP48-202ENST00000374730 BATFQ16520 125 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 ZNF876PQ49A33 203 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 FAM106AQ4KMX7 169 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 C14orf177Q52M58 125 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 PSMG4Q5JS54 123 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 SLC25A34Q6PIV7 304 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 SMIM15Q7Z3B0 74 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 ZFAND2AQ8N6M9 145 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 STPG4Q8N801 248 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 Q8N8P6 123 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 ZNF738Q8NE65 137 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 OR4X2Q8NGF9 303 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 OR1N2Q8NGR9 330 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 OR10J6PQ8NGY7 276 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 YAE1D1Q9NRH1 226 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 FBN2P35556 2912 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 CSPG4Q6UVK1 2322 aa3.55□□□□□ -1.84
USP48-202ENST00000374730 ZANQ9Y493 2812 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 IGLV2-18A0A075B6J9 118 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 MUC21A0A0G2JKD1 596 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 MUC21A0A140T8X8 626 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 IGHV3-11P01762 117 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 COX8AP10176 69 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 PSMB8P28062 276 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 FCER1GP30273 86 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 BLCAPP62952 87 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 HERV-K104P63124 156 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 MUC21Q5SSG8 566 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 PRR9Q5T870 116 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 OR8A1Q8NGG7 326 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 OR2K2Q8NGT1 345 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 IFI27L1Q96BM0 104 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 MRAP2Q96G30 205 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 ODF3Q96PU9 254 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 TMEM208Q9BTX3 173 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 DAZ1Q9NQZ3 744 aaKnown RBP3.54□□□□□ -1.84
USP48-202ENST00000374730 PEF1Q9UBV8 284 aaKnown RBP3.54□□□□□ -1.84
USP48-202ENST00000374730 SMPXQ9UHP9 88 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 GOLT1BQ9Y3E0 138 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 MXRA5Q9NR99 2828 aa3.54□□□□□ -1.84
USP48-202ENST00000374730 LRRK2Q5S007 2527 aa3.53□□□□□ -1.84
USP48-202ENST00000374730 CENPEQ02224 2701 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms