RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 IGLL5B9A064 214 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 RPL39P62891 51 aaKnown RBP6.83□□□□□ -1.32
RTN3-202ENST00000339997 UTF1Q5T230 341 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 CTSZQ9UBR2 303 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 CHD8Q9HCK8 2581 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 F5H768 121 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 H3BRN7 92 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 TRPT1Q86TN4 253 aaKnown RBP6.83□□□□□ -1.32
RTN3-202ENST00000339997 LYPD6Q86Y78 171 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 THAP8Q8NA92 274 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 RNF5Q99942 180 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 DENND4CQ5VZ89 1909 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 DEFB136Q30KP8 78 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 MINOS1Q5TGZ0 78 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 DSCR8Q96T75 97 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 MINOS1-NBL1R4GNA1 71 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 KIF26AQ9ULI4 1882 aaPredicted RBP6.82□□□□□ -1.32
RTN3-202ENST00000339997 A0A0J9YXV3 536 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 PRAC2D3DTV9 90 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 POU2AF1Q16633 256 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 Q6ZS92 163 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 C1orf43Q9BWL3 253 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 SPANXDQ9BXN6 97 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 TRAV26-1A0A087WT03 109 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 RNF223E7ERA6 249 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 K7EM74 188 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 PRSS33Q8NF86 280 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 MP68P56378 58 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 BOD1L2Q8IYS8 172 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 ESM1Q9NQ30 184 aa6.82□□□□□ -1.32
RTN3-202ENST00000339997 I3L3M4 83 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 IGKV1-17P01599 117 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 CFC1BP0CG36 223 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 CFC1P0CG37 223 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 Q8TCH9 128 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 IGKV3D-7A0A0C4DH55 119 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 A4D1N5 150 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 CRYGCP07315 174 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 MGAQ8IWI9 3026 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 IGHV1OR15-1A0A075B7D0 117 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 DAD1P61803 113 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 C5orf38Q86SI9 138 aa6.81□□□□□ -1.32
RTN3-202ENST00000339997 HOXB4P17483 251 aaPredicted RBP6.8□□□□□ -1.32
RTN3-202ENST00000339997 ZNF493Q6ZR52 646 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 FAM215AQ9Y5M1 114 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 B4DSR2 109 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 IGLV2-23P01705 113 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 OPRPNQ99935 248 aaPredicted RBP6.8□□□□□ -1.32
RTN3-202ENST00000339997 C20orf78Q9BR46 151 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 Q9H8V8 135 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 SCRT2Q9NQ03 307 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 M0R1W7 72 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 DSCR9P59020 149 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 ZMAT4Q9H898 229 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 COL4A3Q01955 1670 aa6.8□□□□□ -1.32
RTN3-202ENST00000339997 WT1P19544 449 aaPredicted RBP6.79□□□□□ -1.32
RTN3-202ENST00000339997 XCL1P47992 114 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 LINC00322Q6ZN03 302 aaPredicted RBP6.79□□□□□ -1.32
RTN3-202ENST00000339997 FOXI2Q6ZQN5 318 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 SPATA12Q7Z6I5 190 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 ANKRD29Q8N6D5 301 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 Q8NFD4 153 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 NDUFC2O95298 119 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 CR1LQ2VPA4 569 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 FAM110DQ8TAY7 271 aaPredicted RBP6.79□□□□□ -1.32
RTN3-202ENST00000339997 USMG5Q96IX5 58 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 FAM167A-AS1Q96KT0 104 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 KIAA1549Q9HCM3 1950 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 IGLV10-54A0A075B6I4 117 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 FUSP35637 526 aaKnown RBP eCLIP6.79□□□□□ -1.32
RTN3-202ENST00000339997 MUSTN1Q8IVN3 82 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 TIMM17AQ99595 171 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 C14orf132Q9NPU4 83 aa6.79□□□□□ -1.32
RTN3-202ENST00000339997 Q6ZPA2 131 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 WFDC9Q8NEX5 89 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 A0A0J9YY99 117 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 IGLV2-14P01704 120 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 LINC01545Q5VT33 79 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 DKK4Q9UBT3 224 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 TRACP01848 142 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 BLCAPP62952 87 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 APRG1Q8IVJ8 170 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 PCDH15Q96QU1 1955 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 NUP210Q8TEM1 1887 aaPredicted RBP6.78□□□□□ -1.32
RTN3-202ENST00000339997 COL4A2P08572 1712 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 IGHV4-28A0A0C4DH34 117 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 OOSP1A8MZH6 123 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 BAALC-AS2P0C853 105 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 GP9P14770 177 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 GATA4P43694 442 aa6.78□□□□□ -1.32
RTN3-202ENST00000339997 A0A1B0GX51 115 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 DEFB105AQ8NG35 78 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 UBE2E1P51965 193 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 TMEM14CQ9P0S9 112 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 POLQO75417 2590 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 ANKRD11Q6UB99 2663 aaPredicted RBP6.77□□□□□ -1.33
RTN3-202ENST00000339997 PRRC2AP48634 2157 aaKnown RBP6.77□□□□□ -1.33
RTN3-202ENST00000339997 RHODO00212 210 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 IGHG4P01861 327 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 CEMP1Q6PRD7 247 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms