RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PPDPFQ9H3Y8 114 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 IGKV3-7A0A075B6H7 116 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 ECSCRQ19T08 205 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 C15orf32Q32M92 178 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 MYO18BQ8IUG5 2567 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 NPC2P61916 151 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 CLEC19AQ6UXS0 136 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 MUSTN1Q8IVN3 82 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 DUX3Q96PT4 197 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 AMELXQ99217 191 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 TRAV8-4A0A0B4J246 113 aa10.19□□□□□ -0.78
SKA3-201ENST00000298260 FAM57AQ8TBR7 257 aa10.19□□□□□ -0.78
SKA3-201ENST00000298260 TIMD4Q96H15 378 aa10.19□□□□□ -0.78
SKA3-201ENST00000298260 KAAG1Q9UBP8 84 aa10.19□□□□□ -0.78
SKA3-201ENST00000298260 PHLDA3Q9Y5J5 127 aa10.19□□□□□ -0.78
SKA3-201ENST00000298260 CLPSL1A2RUU4 121 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 F6UB75 175 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 J3QQQ9 107 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 ID1P41134 155 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 LINC01620Q4KN68 170 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 C20orf173Q96LM9 149 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 A0A087WWL8 130 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 E7EQL1 145 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 ZNF56Q15929 161 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 TMEM263Q8WUH6 116 aaKnown RBP10.18□□□□□ -0.78
SKA3-201ENST00000298260 LINC00527Q9UJ94 153 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 CRYBG3Q68DQ2 2970 aa10.18□□□□□ -0.78
SKA3-201ENST00000298260 GPHB5Q86YW7 130 aa10.17□□□□□ -0.78
SKA3-201ENST00000298260 ZFAND3Q9H8U3 227 aa10.17□□□□□ -0.78
SKA3-201ENST00000298260 HIVEP3Q5T1R4 2406 aa10.17□□□□□ -0.78
SKA3-201ENST00000298260 DPM3Q9P2X0 92 aa10.17□□□□□ -0.78
SKA3-201ENST00000298260 SORL1Q92673 2214 aa10.17□□□□□ -0.78
SKA3-201ENST00000298260 LGALS3P17931 250 aaKnown RBP10.16□□□□□ -0.78
SKA3-201ENST00000298260 HERVK_113P61574 105 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 DPH3P1Q9H4G8 78 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 A0A0G2JNJ9 132 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 G3V318 75 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 TRIAP1O43715 76 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 ASIPP42127 132 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 Q9UFV3 132 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 USP24Q9UPU5 2620 aa10.16□□□□□ -0.78
SKA3-201ENST00000298260 ANKHD1Q8IWZ3 2542 aaKnown RBP10.16□□□□□ -0.78
SKA3-201ENST00000298260 IGHV4-4A0A075B6R2 117 aa10.15□□□□□ -0.78
SKA3-201ENST00000298260 IGIPA6NJ69 53 aa10.15□□□□□ -0.78
SKA3-201ENST00000298260 CLEC2BQ92478 149 aa10.15□□□□□ -0.78
SKA3-201ENST00000298260 HRNRQ86YZ3 2850 aaPredicted RBP10.15□□□□□ -0.78
SKA3-201ENST00000298260 RNASE4P34096 147 aaKnown RBP10.15□□□□□ -0.78
SKA3-201ENST00000298260 PMVKQ15126 192 aa10.15□□□□□ -0.78
SKA3-201ENST00000298260 IGFL2Q6UWQ7 119 aa10.15□□□□□ -0.78
SKA3-201ENST00000298260 ZNF256Q9Y2P7 627 aaPredicted RBP10.15□□□□□ -0.78
SKA3-201ENST00000298260 ZNF22P17026 224 aaPredicted RBP10.15□□□□□ -0.79
SKA3-201ENST00000298260 TMEM190Q8WZ59 177 aa10.15□□□□□ -0.79
SKA3-201ENST00000298260 C16orf92Q96LL3 132 aa10.15□□□□□ -0.79
SKA3-201ENST00000298260 CENPVL3A0A0U1RRI6 287 aa10.14□□□□□ -0.79
SKA3-201ENST00000298260 F5H697 171 aa10.14□□□□□ -0.79
SKA3-201ENST00000298260 PRSS2P07478 247 aa10.14□□□□□ -0.79
SKA3-201ENST00000298260 IGF2-ASQ6U949 168 aa10.14□□□□□ -0.79
SKA3-201ENST00000298260 C2orf82Q6UX34 121 aa10.14□□□□□ -0.79
SKA3-201ENST00000298260 NPBQ8NG41 125 aa10.14□□□□□ -0.79
SKA3-201ENST00000298260 IGHV7-81A0A0B4J1V7 117 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 RBAKDNA6NC62 111 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 H3BMM0 161 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 FAM74A4Q5TZK3 123 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 CEMP1Q6PRD7 247 aaPredicted RBP10.13□□□□□ -0.79
SKA3-201ENST00000298260 UBE2WQ96B02 151 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 CCDC140Q96MF4 163 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 RNF5Q99942 180 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 PRRC2AP48634 2157 aaKnown RBP10.13□□□□□ -0.79
SKA3-201ENST00000298260 TNFRSF18Q9Y5U5 241 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 SPG11Q96JI7 2443 aa10.13□□□□□ -0.79
SKA3-201ENST00000298260 ATXN8Q156A1 80 aa10.12□□□□□ -0.79
SKA3-201ENST00000298260 ZFAND2AQ8N6M9 145 aa10.12□□□□□ -0.79
SKA3-201ENST00000298260 VPREB3Q9UKI3 123 aa10.12□□□□□ -0.79
SKA3-201ENST00000298260 A8MZ25 164 aa10.12□□□□□ -0.79
SKA3-201ENST00000298260 LOC107984640A0A0U1RRK4 108 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 H7C423 109 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 LGALS9O00182 355 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 RNASE3P12724 160 aaKnown RBP10.11□□□□□ -0.79
SKA3-201ENST00000298260 C9orf47Q6ZRZ4 202 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 UBE2E1P51965 193 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 OR10J6PQ8NGY7 276 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 M0QXV9 152 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 RPL11P62913 178 aaKnown RBP10.11□□□□□ -0.79
SKA3-201ENST00000298260 RNASE13Q5GAN3 156 aaKnown RBP10.11□□□□□ -0.79
SKA3-201ENST00000298260 Q8NA96 180 aa10.11□□□□□ -0.79
SKA3-201ENST00000298260 KLK5Q9Y337 293 aaPredicted RBP10.11□□□□□ -0.79
SKA3-201ENST00000298260 A0A0J9YXV3 536 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 LY6DQ14210 128 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 FAM208BQ5VWN6 2430 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 TRBV10-2A0A0K0K1G8 114 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 SDHAF1A6NFY7 115 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 ATP6V0E1O15342 81 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 MRPL23Q16540 153 aaKnown RBP10.1□□□□□ -0.79
SKA3-201ENST00000298260 ZNF876PQ49A33 203 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 SUMO4Q6EEV6 95 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 EEF1AKMT3Q96AZ1 226 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 SPXQ9BT56 116 aa10.1□□□□□ -0.79
SKA3-201ENST00000298260 TRAV8-3A0A0A6YYJ7 113 aa10.09□□□□□ -0.79
SKA3-201ENST00000298260 OOSP1A8MZH6 123 aa10.09□□□□□ -0.79
SKA3-201ENST00000298260 LINC01587Q99440 93 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms