RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 A6NDN8 102 aa13.62□□□□□ -0.23
SHKBP1-201ENST00000291842 H7C1H1 209 aa13.62□□□□□ -0.23
SHKBP1-201ENST00000291842 GCSHP23434 173 aa13.62□□□□□ -0.23
SHKBP1-201ENST00000291842 CHTOPQ9Y3Y2 248 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-201ENST00000291842 F8VRH5 84 aa13.61□□□□□ -0.23
SHKBP1-201ENST00000291842 POM121L12Q8N7R1 296 aa13.61□□□□□ -0.23
SHKBP1-201ENST00000291842 CHAC1Q9BUX1 264 aa13.61□□□□□ -0.23
SHKBP1-201ENST00000291842 PRRC2AP48634 2157 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-201ENST00000291842 PLNP26678 52 aa13.61□□□□□ -0.23
SHKBP1-201ENST00000291842 NEXN-AS1Q8NBZ9 246 aa13.61□□□□□ -0.23
SHKBP1-201ENST00000291842 BAALCQ8WXS3 180 aa13.61□□□□□ -0.23
SHKBP1-201ENST00000291842 KNCNA6PVL3 124 aa13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 K7EMI3 77 aa13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 DUSP14O95147 198 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 HTN1P15515 57 aa13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 KHDC1LQ5JSQ8 128 aa13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 TRAV12-1A0A0B4J245 112 aa13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 H3BUT2 72 aa13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 C9orf85Q96MD7 179 aa13.6□□□□□ -0.23
SHKBP1-201ENST00000291842 IGHV1OR15-1A0A075B7D0 117 aa13.59□□□□□ -0.23
SHKBP1-201ENST00000291842 PPP1R17O96001 155 aa13.59□□□□□ -0.23
SHKBP1-201ENST00000291842 FXYD2P54710 66 aa13.59□□□□□ -0.23
SHKBP1-201ENST00000291842 RNASE8Q8TDE3 154 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-201ENST00000291842 ODF3Q96PU9 254 aa13.59□□□□□ -0.23
SHKBP1-201ENST00000291842 H3BRM9 83 aa13.59□□□□□ -0.23
SHKBP1-201ENST00000291842 JMJD8Q96S16 334 aa13.59□□□□□ -0.23
SHKBP1-201ENST00000291842 PRSS29PA6NIE9 313 aa13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 HLA-DRB4P13762 266 aa13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 RPL39P62891 51 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 ZNF56Q15929 161 aa13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 HLA-DRB4X5D2U9 266 aa13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 C9orf118A6NHY6 69 aa13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 OR11H1Q8NG94 326 aa13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 TP53TG1Q9Y2A0 90 aa13.58□□□□□ -0.24
SHKBP1-201ENST00000291842 ITPR3Q14573 2671 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 SDHAF1A6NFY7 115 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 PRM2P04554 102 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 POLR2KP53803 58 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 DEFB131AP59861 70 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 AMTNQ6UX39 209 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 RNF152Q8N8N0 203 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 HIGD1BQ9P298 99 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 ZNF256Q9Y2P7 627 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 RBMY1A1P0DJD3 496 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 RBMY1CP0DJD4 496 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 EMP1P54849 157 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 RBMY1FQ15415 496 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 ZFP2Q6ZN57 461 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 FOXI2Q6ZQN5 318 aa13.57□□□□□ -0.24
SHKBP1-201ENST00000291842 NF1P21359 2839 aa13.56□□□□□ -0.24
SHKBP1-201ENST00000291842 CUBNO60494 3623 aa13.56□□□□□ -0.24
SHKBP1-201ENST00000291842 KRTAP1-3Q8IUG1 177 aa13.56□□□□□ -0.24
SHKBP1-201ENST00000291842 CCDC168Q8NDH2 2452 aa13.56□□□□□ -0.24
SHKBP1-201ENST00000291842 K7ERJ3 54 aa13.56□□□□□ -0.24
SHKBP1-201ENST00000291842 CYSLTR1Q9Y271 337 aa13.56□□□□□ -0.24
SHKBP1-201ENST00000291842 TSHBP01222 138 aa13.55□□□□□ -0.24
SHKBP1-201ENST00000291842 CRYGDP07320 174 aa13.55□□□□□ -0.24
SHKBP1-201ENST00000291842 ZNF876PQ49A33 203 aa13.55□□□□□ -0.24
SHKBP1-201ENST00000291842 HIST2H2BCQ6DN03 193 aa13.55□□□□□ -0.24
SHKBP1-201ENST00000291842 SYT8Q8NBV8 401 aa13.55□□□□□ -0.24
SHKBP1-201ENST00000291842 GAGE10A6NGK3 116 aa13.54□□□□□ -0.24
SHKBP1-201ENST00000291842 VCYO14598 125 aa13.54□□□□□ -0.24
SHKBP1-201ENST00000291842 MORN3Q6PF18 240 aaPredicted RBP13.54□□□□□ -0.24
SHKBP1-201ENST00000291842 KIR2DL4Q99706 377 aa13.54□□□□□ -0.24
SHKBP1-201ENST00000291842 CHD6Q8TD26 2715 aa13.54□□□□□ -0.24
SHKBP1-201ENST00000291842 LINC01619G3V211 115 aa13.54□□□□□ -0.24
SHKBP1-201ENST00000291842 TMEM61Q8N0U2 210 aa13.53□□□□□ -0.24
SHKBP1-201ENST00000291842 LRRC75A-AS1Q8N1F1 130 aa13.53□□□□□ -0.24
SHKBP1-201ENST00000291842 Q8N2B8 174 aa13.53□□□□□ -0.24
SHKBP1-201ENST00000291842 DLX4Q92988 240 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-201ENST00000291842 OR11H12B2RN74 326 aa13.52□□□□□ -0.24
SHKBP1-201ENST00000291842 M0QY20 66 aa13.52□□□□□ -0.24
SHKBP1-201ENST00000291842 SMIM13P0DJ93 91 aa13.52□□□□□ -0.24
SHKBP1-201ENST00000291842 CEND1Q8N111 149 aa13.52□□□□□ -0.24
SHKBP1-201ENST00000291842 WFDC11Q8NEX6 87 aa13.52□□□□□ -0.24
SHKBP1-201ENST00000291842 OR11H2Q8NH07 326 aa13.52□□□□□ -0.24
SHKBP1-201ENST00000291842 NHP2Q9NX24 153 aaKnown RBP13.52□□□□□ -0.24
SHKBP1-201ENST00000291842 IGHV3-73A0A0B4J1V6 119 aa13.52□□□□□ -0.25
SHKBP1-201ENST00000291842 C11orf44Q8N8P7 122 aa13.52□□□□□ -0.25
SHKBP1-201ENST00000291842 KLHL30-AS1Q8NEE0 82 aa13.52□□□□□ -0.25
SHKBP1-201ENST00000291842 TENM4Q6N022 2769 aa13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 GAGE12BA1L429 117 aa13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 IGIPA6NJ69 53 aa13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 RPL32P62910 135 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 RBMY1BA6NDE4 496 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 RBMY1EA6NEQ0 496 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 RBMY1DP0C7P1 496 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 PCP4P48539 62 aa13.51□□□□□ -0.25
SHKBP1-201ENST00000291842 FLNAP21333 2647 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-201ENST00000291842 TRBV27A0A0K0K1C4 114 aa13.5□□□□□ -0.25
SHKBP1-201ENST00000291842 CD300EQ496F6 205 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-201ENST00000291842 PRADC1Q9BSG0 188 aa13.5□□□□□ -0.25
SHKBP1-201ENST00000291842 WNK1Q9H4A3 2382 aa13.5□□□□□ -0.25
SHKBP1-201ENST00000291842 MYMXA0A1B0GTQ4 84 aa13.5□□□□□ -0.25
SHKBP1-201ENST00000291842 HIST1H4GQ99525 98 aa13.5□□□□□ -0.25
SHKBP1-201ENST00000291842 AKAP9Q99996 3911 aa13.49□□□□□ -0.25
SHKBP1-201ENST00000291842 C11orf86A6NJI1 115 aa13.49□□□□□ -0.25
SHKBP1-201ENST00000291842 H3BMM0 161 aa13.49□□□□□ -0.25
SHKBP1-201ENST00000291842 C4orf3Q8WVX3 66 aa13.49□□□□□ -0.25
SHKBP1-201ENST00000291842 OPRPNQ99935 248 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms