RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 SMIM17P0DL12 118 aa12.19□□□□□ -0.46
CCDC40-201ENST00000269318 IGLC3P0DOY3 106 aa12.19□□□□□ -0.46
CCDC40-201ENST00000269318 IGLL1P15814 213 aa12.19□□□□□ -0.46
CCDC40-201ENST00000269318 CBY3A6NI87 242 aa12.19□□□□□ -0.46
CCDC40-201ENST00000269318 FOSL1P15407 271 aa12.19□□□□□ -0.46
CCDC40-201ENST00000269318 SYT8Q8NBV8 401 aa12.19□□□□□ -0.46
CCDC40-201ENST00000269318 IFI27L1Q96BM0 104 aa12.19□□□□□ -0.46
CCDC40-201ENST00000269318 A0A087WWL8 130 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 TCAPO15273 167 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 SAP30O75446 220 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 IGLV1-51P01701 117 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 LAGE3Q14657 143 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 NDUFA11Q86Y39 141 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 TMEM158Q8WZ71 300 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 PMCHL2Q9BQD1 86 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 PPP1R17O96001 155 aa12.18□□□□□ -0.46
CCDC40-201ENST00000269318 NSD1Q96L73 2696 aaPredicted RBP12.17□□□□□ -0.46
CCDC40-201ENST00000269318 WNK1Q9H4A3 2382 aa12.17□□□□□ -0.46
CCDC40-201ENST00000269318 OR11H12B2RN74 326 aa12.17□□□□□ -0.46
CCDC40-201ENST00000269318 CRYGDP07320 174 aa12.17□□□□□ -0.46
CCDC40-201ENST00000269318 SUMO4Q6EEV6 95 aa12.17□□□□□ -0.46
CCDC40-201ENST00000269318 LINC00467Q9BRT7 94 aa12.17□□□□□ -0.46
CCDC40-201ENST00000269318 hDV102S1A0JD36 115 aa12.16□□□□□ -0.46
CCDC40-201ENST00000269318 LGALS9BQ3B8N2 356 aa12.16□□□□□ -0.46
CCDC40-201ENST00000269318 LGALS9CQ6DKI2 356 aa12.16□□□□□ -0.46
CCDC40-201ENST00000269318 TRPT1Q86TN4 253 aaKnown RBP12.16□□□□□ -0.46
CCDC40-201ENST00000269318 UQCR10Q9UDW1 63 aa12.16□□□□□ -0.46
CCDC40-201ENST00000269318 C18orf15Q96N68 181 aa12.16□□□□□ -0.46
CCDC40-201ENST00000269318 HIVEP1P15822 2718 aa12.15□□□□□ -0.46
CCDC40-201ENST00000269318 INSP01308 110 aa12.15□□□□□ -0.46
CCDC40-201ENST00000269318 ZNF876PQ49A33 203 aa12.15□□□□□ -0.46
CCDC40-201ENST00000269318 STHQ8IWL8 128 aa12.15□□□□□ -0.46
CCDC40-201ENST00000269318 ST20Q9HBF5 79 aa12.15□□□□□ -0.46
CCDC40-201ENST00000269318 K7EMI3 77 aa12.14□□□□□ -0.47
CCDC40-201ENST00000269318 PRM2P04554 102 aa12.14□□□□□ -0.47
CCDC40-201ENST00000269318 HTN1P15515 57 aa12.14□□□□□ -0.47
CCDC40-201ENST00000269318 RPL32P62910 135 aaKnown RBP12.14□□□□□ -0.47
CCDC40-201ENST00000269318 NIPBLQ6KC79 2804 aaeCLIP12.14□□□□□ -0.47
CCDC40-201ENST00000269318 FAM74A4Q5TZK3 123 aa12.14□□□□□ -0.47
CCDC40-201ENST00000269318 FN1P02751 2386 aaKnown RBP12.13□□□□□ -0.47
CCDC40-201ENST00000269318 CMC4P56277 68 aaPredicted RBP12.13□□□□□ -0.47
CCDC40-201ENST00000269318 BEAN1Q3B7T3 259 aa12.13□□□□□ -0.47
CCDC40-201ENST00000269318 ORMDL2Q53FV1 153 aa12.13□□□□□ -0.47
CCDC40-201ENST00000269318 FAM110AQ9BQ89 295 aa12.13□□□□□ -0.47
CCDC40-201ENST00000269318 GOLT1BQ9Y3E0 138 aa12.13□□□□□ -0.47
CCDC40-201ENST00000269318 F5H697 171 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 CRLF1O75462 422 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 C11orf72Q8NBR9 251 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 LINC01587Q99440 93 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 SNHG12Q9BXW3 62 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 CSTL1Q9H114 145 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 C19orf73Q9NVV2 129 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 TRBV6-5A0A0K0K1A5 114 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 M0QY20 66 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 EREGO14944 169 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 NUDT3O95989 172 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 POLR2KP53803 58 aaKnown RBP12.12□□□□□ -0.47
CCDC40-201ENST00000269318 PTH2Q96A98 100 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 XCL2Q9UBD3 114 aa12.12□□□□□ -0.47
CCDC40-201ENST00000269318 HSBP1L1C9JCN9 74 aa12.11□□□□□ -0.47
CCDC40-201ENST00000269318 ATP5LO75964 103 aa12.11□□□□□ -0.47
CCDC40-201ENST00000269318 ZNF415Q09FC8 603 aa12.11□□□□□ -0.47
CCDC40-201ENST00000269318 PIK3CD-AS1Q5SR53 167 aa12.11□□□□□ -0.47
CCDC40-201ENST00000269318 MORN3Q6PF18 240 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-201ENST00000269318 MRPL52Q86TS9 123 aaKnown RBP12.11□□□□□ -0.47
CCDC40-201ENST00000269318 LINC00482Q8N8I6 264 aa12.11□□□□□ -0.47
CCDC40-201ENST00000269318 M0R2P5 195 aa12.1□□□□□ -0.47
CCDC40-201ENST00000269318 ZNF56Q15929 161 aa12.1□□□□□ -0.47
CCDC40-201ENST00000269318 Q6ZN92 141 aa12.1□□□□□ -0.47
CCDC40-201ENST00000269318 ODF1Q14990 250 aa12.1□□□□□ -0.47
CCDC40-201ENST00000269318 LBHQ53QV2 105 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-201ENST00000269318 C1orf158Q8N1D5 194 aa12.1□□□□□ -0.47
CCDC40-201ENST00000269318 TOMM6Q96B49 74 aa12.1□□□□□ -0.47
CCDC40-201ENST00000269318 DKK2Q9UBU2 259 aa12.1□□□□□ -0.47
CCDC40-201ENST00000269318 M0R143 59 aa12.09□□□□□ -0.47
CCDC40-201ENST00000269318 NEGR1Q7Z3B1 354 aa12.09□□□□□ -0.47
CCDC40-201ENST00000269318 C2orf88Q9BSF0 95 aa12.09□□□□□ -0.47
CCDC40-201ENST00000269318 CYSRT1A8MQ03 144 aa12.09□□□□□ -0.47
CCDC40-201ENST00000269318 UFSP1Q6NVU6 142 aa12.09□□□□□ -0.47
CCDC40-201ENST00000269318 ZMAT4Q9H898 229 aa12.09□□□□□ -0.47
CCDC40-201ENST00000269318 C2CD3Q4AC94 2353 aa12.08□□□□□ -0.48
CCDC40-201ENST00000269318 TRBV27A0A0K0K1C4 114 aa12.08□□□□□ -0.48
CCDC40-201ENST00000269318 PF4P02776 101 aa12.08□□□□□ -0.48
CCDC40-201ENST00000269318 PRSS1P07477 247 aa12.08□□□□□ -0.48
CCDC40-201ENST00000269318 HNRNPA3P51991 378 aaKnown RBP12.08□□□□□ -0.48
CCDC40-201ENST00000269318 NUTF2P61970 127 aaKnown RBP12.08□□□□□ -0.48
CCDC40-201ENST00000269318 WFDC10AQ9H1F0 79 aa12.08□□□□□ -0.48
CCDC40-201ENST00000269318 EDA2RQ9HAV5 297 aa12.08□□□□□ -0.48
CCDC40-201ENST00000269318 SDHAF1A6NFY7 115 aa12.07□□□□□ -0.48
CCDC40-201ENST00000269318 VCYO14598 125 aa12.07□□□□□ -0.48
CCDC40-201ENST00000269318 GIG44P09565 113 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-201ENST00000269318 A8MWV9 139 aa12.07□□□□□ -0.48
CCDC40-201ENST00000269318 AZU1P20160 251 aa12.07□□□□□ -0.48
CCDC40-201ENST00000269318 SPXQ9BT56 116 aa12.07□□□□□ -0.48
CCDC40-201ENST00000269318 TP73-AS1Q9UF72 201 aa12.07□□□□□ -0.48
CCDC40-201ENST00000269318 C2orf66Q6UXQ4 117 aa12.06□□□□□ -0.48
CCDC40-201ENST00000269318 MRPS16Q9Y3D3 137 aaKnown RBP12.06□□□□□ -0.48
CCDC40-201ENST00000269318 ANKRD39Q53RE8 183 aa12.05□□□□□ -0.48
CCDC40-201ENST00000269318 ZFP2Q6ZN57 461 aa12.05□□□□□ -0.48
CCDC40-201ENST00000269318 IL17DQ8TAD2 202 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms