RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MGAM2Q2M2H8 2515 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 PRO1933Q9H354 126 aa12.01□□□□□ -0.49
USP4-201ENST00000265560 TCAPO15273 167 aa12.01□□□□□ -0.49
USP4-201ENST00000265560 SMIM17P0DL12 118 aa12.01□□□□□ -0.49
USP4-201ENST00000265560 NRACQ8N912 160 aa12□□□□□ -0.49
USP4-201ENST00000265560 LINC00315P59091 139 aa12□□□□□ -0.49
USP4-201ENST00000265560 SPATA12Q7Z6I5 190 aa12□□□□□ -0.49
USP4-201ENST00000265560 RASL10AQ92737 203 aa12□□□□□ -0.49
USP4-201ENST00000265560 MAP1LC3AQ9H492 121 aa12□□□□□ -0.49
USP4-201ENST00000265560 MRPL16Q9NX20 251 aaKnown RBP12□□□□□ -0.49
USP4-201ENST00000265560 DNLZQ5SXM8 178 aa11.99□□□□□ -0.49
USP4-201ENST00000265560 PMCHL2Q9BQD1 86 aa11.99□□□□□ -0.49
USP4-201ENST00000265560 C3orf56Q8N813 242 aa11.99□□□□□ -0.49
USP4-201ENST00000265560 KIF25-AS1Q9Y6Z4 181 aa11.99□□□□□ -0.49
USP4-201ENST00000265560 TRGV11A0A075B6L2 103 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 LEPROTL1O95214 131 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 MED14OSP0DP75 135 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 NUTF2P61970 127 aaKnown RBP11.98□□□□□ -0.49
USP4-201ENST00000265560 OXLD1Q5BKU9 147 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 CHCHD1Q96BP2 118 aaKnown RBP11.98□□□□□ -0.49
USP4-201ENST00000265560 ANK2Q01484 3957 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 A0A096LNJ9 63 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 ZNF56Q15929 161 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 Q9UF83 564 aa11.98□□□□□ -0.49
USP4-201ENST00000265560 PPBPP02775 128 aa11.97□□□□□ -0.49
USP4-201ENST00000265560 C18orf15Q96N68 181 aa11.97□□□□□ -0.49
USP4-201ENST00000265560 C9orf66Q5T8R8 295 aa11.97□□□□□ -0.49
USP4-201ENST00000265560 NXPH4O95158 308 aa11.97□□□□□ -0.49
USP4-201ENST00000265560 CRYGDP07320 174 aa11.97□□□□□ -0.49
USP4-201ENST00000265560 SUMO4Q6EEV6 95 aa11.97□□□□□ -0.49
USP4-201ENST00000265560 P0DMU3 169 aa11.96□□□□□ -0.49
USP4-201ENST00000265560 FAM231AP0DMU4 169 aa11.96□□□□□ -0.49
USP4-201ENST00000265560 FAM231CP0DMU5 169 aa11.96□□□□□ -0.49
USP4-201ENST00000265560 EMP1P54849 157 aa11.96□□□□□ -0.49
USP4-201ENST00000265560 GTSCR1Q86UQ5 136 aa11.96□□□□□ -0.49
USP4-201ENST00000265560 C11orf72Q8NBR9 251 aa11.96□□□□□ -0.5
USP4-201ENST00000265560 SYT8Q8NBV8 401 aa11.95□□□□□ -0.5
USP4-201ENST00000265560 MAJINQ3KP22 176 aa11.95□□□□□ -0.5
USP4-201ENST00000265560 Q8N976 141 aa11.95□□□□□ -0.5
USP4-201ENST00000265560 CMYA5Q8N3K9 4069 aa11.95□□□□□ -0.5
USP4-201ENST00000265560 IGHV3-53P01767 116 aa11.93□□□□□ -0.5
USP4-201ENST00000265560 BTF3P20290 206 aaKnown RBP11.93□□□□□ -0.5
USP4-201ENST00000265560 ZNF415Q09FC8 603 aa11.93□□□□□ -0.5
USP4-201ENST00000265560 Q6ZSN1 163 aa11.93□□□□□ -0.5
USP4-201ENST00000265560 ZNF664Q8N3J9 261 aa11.93□□□□□ -0.5
USP4-201ENST00000265560 PAM16Q9Y3D7 125 aa11.93□□□□□ -0.5
USP4-201ENST00000265560 TRGV1A0A0A0MS02 117 aa11.93□□□□□ -0.5
USP4-201ENST00000265560 SUMO2P61956 95 aaKnown RBP11.93□□□□□ -0.5
USP4-201ENST00000265560 MRAP2Q96G30 205 aa11.93□□□□□ -0.5
USP4-201ENST00000265560 IGLV2-18A0A075B6J9 118 aa11.92□□□□□ -0.5
USP4-201ENST00000265560 TMEM158Q8WZ71 300 aa11.92□□□□□ -0.5
USP4-201ENST00000265560 CSTL1Q9H114 145 aa11.92□□□□□ -0.5
USP4-201ENST00000265560 NOP10Q9NPE3 64 aaKnown RBP11.92□□□□□ -0.5
USP4-201ENST00000265560 M0R2P5 195 aa11.92□□□□□ -0.5
USP4-201ENST00000265560 Q6ZTI0 123 aa11.92□□□□□ -0.5
USP4-201ENST00000265560 INSL3P51460 131 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 CMC4P56277 68 aaPredicted RBP11.91□□□□□ -0.5
USP4-201ENST00000265560 Q8N8P6 123 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 TCTAP57738 103 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 S100A12P80511 92 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 CSNK1G2-AS1Q8NCQ2 148 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 CLUHP3Q96NS8 147 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 TMEM70Q9BUB7 260 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 ZNF747Q9BV97 191 aa11.91□□□□□ -0.5
USP4-201ENST00000265560 C12orf54Q6X4T0 127 aa11.9□□□□□ -0.5
USP4-201ENST00000265560 SMIM2Q9BVW6 85 aa11.9□□□□□ -0.5
USP4-201ENST00000265560 SYS1-DBNDD2H3BUS1 97 aa11.9□□□□□ -0.5
USP4-201ENST00000265560 RIPPLY3P57055 190 aa11.9□□□□□ -0.5
USP4-201ENST00000265560 MORN3Q6PF18 240 aaPredicted RBP11.9□□□□□ -0.5
USP4-201ENST00000265560 RNASE8Q8TDE3 154 aaKnown RBP11.9□□□□□ -0.5
USP4-201ENST00000265560 NXT2Q9NPJ8 142 aaKnown RBP11.9□□□□□ -0.5
USP4-201ENST00000265560 HBDP02042 147 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 POM121L12Q8N7R1 296 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 LAMTOR2Q9Y2Q5 125 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 TENM3Q9P273 2699 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 M0QY20 66 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 DEFB4AO15263 64 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 WFDC9Q8NEX5 89 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 FAM110AQ9BQ89 295 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 GOLT1BQ9Y3E0 138 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 CFAP126Q5VTH2 177 aa11.89□□□□□ -0.51
USP4-201ENST00000265560 SDHAF1A6NFY7 115 aa11.88□□□□□ -0.51
USP4-201ENST00000265560 NUDT3O95989 172 aa11.88□□□□□ -0.51
USP4-201ENST00000265560 DEFB135Q30KP9 77 aa11.88□□□□□ -0.51
USP4-201ENST00000265560 MAP1LC3CQ9BXW4 147 aa11.88□□□□□ -0.51
USP4-201ENST00000265560 LAGE3Q14657 143 aa11.87□□□□□ -0.51
USP4-201ENST00000265560 C20orf144Q9BQM9 153 aa11.87□□□□□ -0.51
USP4-201ENST00000265560 ST20Q9HBF5 79 aa11.87□□□□□ -0.51
USP4-201ENST00000265560 LINC00587B1AMM8 73 aa11.87□□□□□ -0.51
USP4-201ENST00000265560 ZNF479Q96JC4 524 aa11.87□□□□□ -0.51
USP4-201ENST00000265560 GAGE12BA1L429 117 aa11.86□□□□□ -0.51
USP4-201ENST00000265560 GAGE7O76087 117 aa11.86□□□□□ -0.51
USP4-201ENST00000265560 GAGE12FP0CL80 117 aa11.86□□□□□ -0.51
USP4-201ENST00000265560 GAGE12GP0CL81 117 aa11.86□□□□□ -0.51
USP4-201ENST00000265560 GAGE12IP0CL82 117 aa11.86□□□□□ -0.51
USP4-201ENST00000265560 RRN3P1Q2M238 152 aa11.86□□□□□ -0.51
USP4-201ENST00000265560 HSPB8Q9UJY1 196 aa11.86□□□□□ -0.51
USP4-201ENST00000265560 TMEM263Q8WUH6 116 aaKnown RBP11.86□□□□□ -0.51
USP4-201ENST00000265560 PLAC8L1A1L4L8 177 aa11.85□□□□□ -0.51
USP4-201ENST00000265560 FCER1GP30273 86 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms