RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 IGLC6P0CF74 106 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 C20orf78Q9BR46 151 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 SVEP1Q4LDE5 3571 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 DEFB125Q8N687 156 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 OR11H2Q8NH07 326 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 CHCHD5Q9BSY4 110 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 CSMD1Q96PZ7 3565 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 A0A1B0GXF2 115 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 DMRTA1Q5VZB9 504 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 PHLDA1Q8WV24 401 aaPredicted RBP8.66□□□□□ -1.02
VPS4A-201ENST00000254950 C16orf74Q96GX8 76 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 A0A1B0GV90 55 aa8.66□□□□□ -1.02
VPS4A-201ENST00000254950 DPM2O94777 84 aa8.65□□□□□ -1.02
VPS4A-201ENST00000254950 MDFICQ9P1T7 246 aa8.65□□□□□ -1.02
VPS4A-201ENST00000254950 ZNF124Q15973 351 aa8.65□□□□□ -1.02
VPS4A-201ENST00000254950 PYY3Q5JQD4 70 aa8.65□□□□□ -1.02
VPS4A-201ENST00000254950 SYS1-DBNDD2H3BUS1 97 aa8.65□□□□□ -1.03
VPS4A-201ENST00000254950 TRAV9-2A0A087WT02 112 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 GAGE12JA6NER3 117 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 GAGE1Q13065 139 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 GAGE4Q13068 117 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 GAGE5Q13069 117 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 SRSF9Q13242 221 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS4A-201ENST00000254950 KIR3DS1Q14943 382 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 GAGE13Q4V321 117 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 ADAMTSL5Q6ZMM2 481 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 NACAE9PAV3 2078 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 LRBAP50851 2863 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 I3L3M4 83 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 GATA1P15976 413 aaPredicted RBP8.64□□□□□ -1.03
VPS4A-201ENST00000254950 C21orf62-AS1Q17RA5 79 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 LGALS3P17931 250 aaKnown RBP8.64□□□□□ -1.03
VPS4A-201ENST00000254950 C2orf66Q6UXQ4 117 aa8.64□□□□□ -1.03
VPS4A-201ENST00000254950 DDTP30046 118 aa8.63□□□□□ -1.03
VPS4A-201ENST00000254950 ZNRF2Q8NHG8 242 aa8.63□□□□□ -1.03
VPS4A-201ENST00000254950 CHTOPQ9Y3Y2 248 aaKnown RBP8.63□□□□□ -1.03
VPS4A-201ENST00000254950 KLLNB2CW77 178 aa8.63□□□□□ -1.03
VPS4A-201ENST00000254950 F5H768 121 aa8.63□□□□□ -1.03
VPS4A-201ENST00000254950 IGLL1P15814 213 aa8.63□□□□□ -1.03
VPS4A-201ENST00000254950 YPEL4Q96NS1 127 aa8.63□□□□□ -1.03
VPS4A-201ENST00000254950 IGHV1-24A0A0C4DH33 117 aa8.63□□□□□ -1.03
VPS4A-201ENST00000254950 TRAV8-6A0A0B4J262 113 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 C14orf144Q96I85 54 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 SOCS3O14543 225 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 NEGR1Q7Z3B1 354 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 ADARB2-AS1A8MUL3 147 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 H3BRM9 83 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 IGKCP01834 107 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 PRR9Q5T870 116 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 ERASQ7Z444 233 aa8.62□□□□□ -1.03
VPS4A-201ENST00000254950 TMEM263Q8WUH6 116 aaKnown RBP8.62□□□□□ -1.03
VPS4A-201ENST00000254950 DEFB135Q30KP9 77 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 SUMO4Q6EEV6 95 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 TP53TG1Q9Y2A0 90 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 A0A087WX48 190 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 IGLV1-51P01701 117 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 SNAI2O43623 268 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 OR5A1Q8NGJ0 315 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 ODF3L2Q3SX64 289 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 RPL39LQ96EH5 51 aaKnown RBP8.61□□□□□ -1.03
VPS4A-201ENST00000254950 C11orf21Q9P2W6 132 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 TP53TG3Q9ULZ0 132 aa8.61□□□□□ -1.03
VPS4A-201ENST00000254950 UNC79Q9P2D8 2635 aa8.6□□□□□ -1.03
VPS4A-201ENST00000254950 K7EMI3 77 aa8.6□□□□□ -1.03
VPS4A-201ENST00000254950 RHOHQ15669 191 aa8.6□□□□□ -1.03
VPS4A-201ENST00000254950 SPENQ96T58 3664 aaKnown RBP8.6□□□□□ -1.03
VPS4A-201ENST00000254950 TEX43Q6ZNM6 134 aa8.6□□□□□ -1.03
VPS4A-201ENST00000254950 Q6ZWC4 215 aa8.6□□□□□ -1.03
VPS4A-201ENST00000254950 IGHV3-38A0A0C4DH36 116 aa8.59□□□□□ -1.03
VPS4A-201ENST00000254950 COX8CQ7Z4L0 72 aa8.59□□□□□ -1.03
VPS4A-201ENST00000254950 JPT2Q9H910 190 aa8.59□□□□□ -1.03
VPS4A-201ENST00000254950 SPART-AS1P0CW21 52 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 NUPR1O60356 82 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 PLNP26678 52 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 WFDC10AQ9H1F0 79 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 TRBV25-1A0A075B6N4 114 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 A6NDN8 102 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 PAX4O43316 350 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 TDRG1Q3Y452 100 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 TMEM141Q96I45 108 aa8.58□□□□□ -1.04
VPS4A-201ENST00000254950 DNLZQ5SXM8 178 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 LINC00482Q8N8I6 264 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 DNAJC30Q96LL9 226 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 Q1RN00 199 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 MIEN1Q9BRT3 115 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 TEX48A0A1B0GUV7 120 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 SEC11AP67812 179 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 KRTAP1-1Q07627 177 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 TMEM243Q9BU79 118 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 ZMAT4Q9H898 229 aa8.57□□□□□ -1.04
VPS4A-201ENST00000254950 CIRBPQ14011 172 aaKnown RBP8.56□□□□□ -1.04
VPS4A-201ENST00000254950 LINC00469Q8N7U9 141 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 MRAPQ8TCY5 172 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 HIST1H4GQ99525 98 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 CIDEAO60543 219 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 HINT1P49773 126 aaPredicted RBP8.56□□□□□ -1.04
VPS4A-201ENST00000254950 VAMP3Q15836 100 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 ZNF747Q9BV97 191 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 PRSS2P07478 247 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 FHL3Q13643 280 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms