RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 NDUFA12Q9UI09 145 aa9.88□□□□□ -0.83
USP40-201ENST00000251722 IGKV2D-24A0A075B6R9 120 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 MUSTN1Q8IVN3 82 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 DYNAPQ8N1N2 210 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 K7EN84 100 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 BUB3O43684 328 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 C9orf47Q6ZRZ4 202 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 IGHV4OR15-8A0A075B7B6 117 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 A0A087WW49 117 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 Q8N7P7 452 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 RIF1Q5UIP0 2472 aaKnown RBP9.87□□□□□ -0.83
USP40-201ENST00000251722 IGKV3D-7A0A0C4DH55 119 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 WIPF3A6NGB9 483 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 C14orf177Q52M58 125 aa9.87□□□□□ -0.83
USP40-201ENST00000251722 UFSP1Q6NVU6 142 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 SLC25A29Q8N8R3 303 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 SPTSSBQ8NFR3 76 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 LINC00526Q96FQ7 95 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 ODF3Q96PU9 254 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 COL4A4P53420 1690 aaPredicted RBP9.86□□□□□ -0.83
USP40-201ENST00000251722 DNAJC9-AS1A6NH13 148 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 FGF23Q9GZV9 251 aaPredicted RBP9.86□□□□□ -0.83
USP40-201ENST00000251722 CEP250Q9BV73 2442 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 ODF3BA8MYP8 253 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 LGALS9O00182 355 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 BLCAPP62952 87 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 IGLV2-23P01705 113 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 Q6YL49 198 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 BAALCQ8WXS3 180 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 MLST8Q9BVC4 326 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 SERP1Q9Y6X1 66 aa9.86□□□□□ -0.83
USP40-201ENST00000251722 PPDPFQ9H3Y8 114 aa9.85□□□□□ -0.83
USP40-201ENST00000251722 RS1O15537 224 aa9.85□□□□□ -0.83
USP40-201ENST00000251722 ZFP36P26651 326 aaKnown RBP9.85□□□□□ -0.83
USP40-201ENST00000251722 ATP5EP2Q5VTU8 51 aa9.85□□□□□ -0.83
USP40-201ENST00000251722 DSCR8Q96T75 97 aa9.85□□□□□ -0.83
USP40-201ENST00000251722 GVINP1Q7Z2Y8 2422 aa9.85□□□□□ -0.83
USP40-201ENST00000251722 MPLKIPQ8TAP9 179 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 PLA2G2EQ9NZK7 142 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 UBE2BP63146 152 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 MRPL36Q9P0J6 103 aaKnown RBP9.84□□□□□ -0.83
USP40-201ENST00000251722 IGKV1-17P01599 117 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 IGHV4-31P0DP07 118 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 LMO4P61968 165 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 SNRNP200O75643 2136 aaKnown RBP9.84□□□□□ -0.83
USP40-201ENST00000251722 TEX22C9J3V5 150 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 DEFB136Q30KP8 78 aa9.84□□□□□ -0.83
USP40-201ENST00000251722 TIMM17BO60830 172 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 C2orf16Q68DN1 1984 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 IGKV1OR2-108A0A075B7D4 117 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 GYPEP15421 78 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 SPRNQ5BIV9 151 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 C20orf197Q8N268 126 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 ZNF843Q8N446 348 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 TCL1BO95988 128 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 LINC00173Q6ZV60 143 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 PHF3Q92576 2039 aaKnown RBP9.83□□□□□ -0.84
USP40-201ENST00000251722 F8WDY8 70 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 TMEM131Q92545 1883 aa9.83□□□□□ -0.84
USP40-201ENST00000251722 KIF26AQ9ULI4 1882 aaPredicted RBP9.83□□□□□ -0.84
USP40-201ENST00000251722 IGF1P05019 195 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 COL6A6A6NMZ7 2263 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 IGHV3-38A0A0C4DH36 116 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 ZNF318Q5VUA4 2279 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 LYPD6Q86Y78 171 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 CFHR4Q92496 578 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 ORMDL1Q9P0S3 153 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 GPR179Q6PRD1 2367 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 ABCA4P78363 2273 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 TRAV12-1A0A0B4J245 112 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 PLXNB3Q9ULL4 1909 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 DIDO1Q9BTC0 2240 aaKnown RBP9.82□□□□□ -0.84
USP40-201ENST00000251722 WFDC9Q8NEX5 89 aa9.82□□□□□ -0.84
USP40-201ENST00000251722 TRBV10-1A0A0K0K1A3 114 aa9.81□□□□□ -0.84
USP40-201ENST00000251722 TMEM263Q8WUH6 116 aaKnown RBP9.81□□□□□ -0.84
USP40-201ENST00000251722 EGR2P11161 476 aaPredicted RBP9.81□□□□□ -0.84
USP40-201ENST00000251722 RPS28P62857 69 aaKnown RBP9.81□□□□□ -0.84
USP40-201ENST00000251722 COX7A2LO14548 114 aa9.81□□□□□ -0.84
USP40-201ENST00000251722 RPL18AQ02543 176 aaKnown RBP9.81□□□□□ -0.84
USP40-201ENST00000251722 H0YGX0 51 aa9.81□□□□□ -0.84
USP40-201ENST00000251722 TP53BP1Q12888 1972 aaPredicted RBP9.81□□□□□ -0.84
USP40-201ENST00000251722 F8W735 103 aaPredicted RBP9.8□□□□□ -0.84
USP40-201ENST00000251722 APRG1Q8IVJ8 170 aa9.8□□□□□ -0.84
USP40-201ENST00000251722 TRAV4A0A0B4J268 109 aa9.8□□□□□ -0.84
USP40-201ENST00000251722 A0A0J9YY99 117 aa9.8□□□□□ -0.84
USP40-201ENST00000251722 PRB4P10163 310 aaPredicted RBP9.8□□□□□ -0.84
USP40-201ENST00000251722 YLPM1P49750 1951 aaKnown RBP9.8□□□□□ -0.84
USP40-201ENST00000251722 CFAP126Q5VTH2 177 aa9.8□□□□□ -0.84
USP40-201ENST00000251722 GNRH2O43555 120 aa9.8□□□□□ -0.84
USP40-201ENST00000251722 ZNF407Q9C0G0 2248 aa9.8□□□□□ -0.84
USP40-201ENST00000251722 ZNF503Q96F45 646 aa9.79□□□□□ -0.84
USP40-201ENST00000251722 CAMK2N2Q96S95 79 aa9.79□□□□□ -0.84
USP40-201ENST00000251722 JMJD7-PLA2G4BH0Y9G9 81 aa9.79□□□□□ -0.84
USP40-201ENST00000251722 SPRY2O43597 315 aa9.79□□□□□ -0.84
USP40-201ENST00000251722 TRAV26-2A0A0B4J265 109 aa9.79□□□□□ -0.84
USP40-201ENST00000251722 ODF3L1Q8IXM7 274 aa9.79□□□□□ -0.84
USP40-201ENST00000251722 HHLA3Q9XRX5 114 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 PMAIP1Q13794 54 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 HEATR5AQ86XA9 2040 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 TRBV7-3A0A075B6L6 115 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms