RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 MDFICQ9P1T7 246 aa6.12□□□□□ -1.43
VAMP3-201ENST00000054666 AGRNO00468 2067 aa6.12□□□□□ -1.43
VAMP3-201ENST00000054666 H3BMM0 161 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 SIVA1O15304 175 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 LINC00315P59091 139 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 ZC2HC1BQ5TFG8 222 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 RAX2Q96IS3 184 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 SPAG8Q99932 426 aaPredicted RBP6.11□□□□□ -1.43
VAMP3-201ENST00000054666 JPT2Q9H910 190 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 MAP6D1Q9H9H5 199 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 CYSLTR1Q9Y271 337 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 COX11Q9Y6N1 276 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 A0A1W2PRX2 142 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 F8VRH5 84 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 H7C1H1 209 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 ZNF876PQ49A33 203 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 ORAOV1Q8WV07 137 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 NBPF19A0A087WUL8 3843 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 TLN2Q9Y4G6 2542 aa6.11□□□□□ -1.43
VAMP3-201ENST00000054666 SDHAF1A6NFY7 115 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 A8MTW9 85 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 VCYO14598 125 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 SEC11AP67812 179 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 HSD52Q0P140 79 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 DEFB114Q30KQ6 69 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 CD300EQ496F6 205 aaPredicted RBP6.1□□□□□ -1.43
VAMP3-201ENST00000054666 ERASQ7Z444 233 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 ESM1Q9NQ30 184 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 CHTOPQ9Y3Y2 248 aaKnown RBP6.1□□□□□ -1.43
VAMP3-201ENST00000054666 ZNF469Q96JG9 3925 aaPredicted RBP6.1□□□□□ -1.43
VAMP3-201ENST00000054666 ITPR3Q14573 2671 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 APCP25054 2843 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 TRAV25A0A0B4J276 109 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 TRBV6-5A0A0K0K1A5 114 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 RNASE1P07998 156 aaKnown RBP6.1□□□□□ -1.43
VAMP3-201ENST00000054666 HTN1P15515 57 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 ZNF415Q09FC8 603 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 NEGR1Q7Z3B1 354 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 TRPT1Q86TN4 253 aaKnown RBP6.1□□□□□ -1.43
VAMP3-201ENST00000054666 GTSCR1Q86UQ5 136 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 PCP2Q8IVA1 136 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 C11orf44Q8N8P7 122 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 MYO9AB2RTY4 2548 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 CCDC168Q8NDH2 2452 aa6.1□□□□□ -1.43
VAMP3-201ENST00000054666 SONP18583 2426 aaKnown RBP6.1□□□□□ -1.43
VAMP3-201ENST00000054666 CCL24O00175 119 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 INSP01308 110 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 POLR2KP53803 58 aaKnown RBP6.09□□□□□ -1.43
VAMP3-201ENST00000054666 KRTAP1-1Q07627 177 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 FHL3Q13643 280 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 ZNF418Q8TF45 676 aaPredicted RBP6.09□□□□□ -1.43
VAMP3-201ENST00000054666 JMJD8Q96S16 334 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 HHLA3Q9XRX5 114 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 TP53TG1Q9Y2A0 90 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 TSSC4Q9Y5U2 329 aaPredicted RBP6.09□□□□□ -1.43
VAMP3-201ENST00000054666 SORL1Q92673 2214 aa6.09□□□□□ -1.43
VAMP3-201ENST00000054666 A6NDN8 102 aa6.09□□□□□ -1.44
VAMP3-201ENST00000054666 RBMY1A1P0DJD3 496 aaKnown RBP6.09□□□□□ -1.44
VAMP3-201ENST00000054666 RBMY1CP0DJD4 496 aa6.09□□□□□ -1.44
VAMP3-201ENST00000054666 CD28P10747 220 aa6.09□□□□□ -1.44
VAMP3-201ENST00000054666 RBMY1FQ15415 496 aaKnown RBP6.09□□□□□ -1.44
VAMP3-201ENST00000054666 ZNF124Q15973 351 aa6.09□□□□□ -1.44
VAMP3-201ENST00000054666 ZFP2Q6ZN57 461 aa6.09□□□□□ -1.44
VAMP3-201ENST00000054666 NEXN-AS1Q8NBZ9 246 aa6.09□□□□□ -1.44
VAMP3-201ENST00000054666 BAALCQ8WXS3 180 aa6.09□□□□□ -1.44
VAMP3-201ENST00000054666 TEX15Q9BXT5 2789 aa6.08□□□□□ -1.44
VAMP3-201ENST00000054666 IGKV2D-26A0A0A0MRZ7 120 aa6.08□□□□□ -1.44
VAMP3-201ENST00000054666 TRBV27A0A0K0K1C4 114 aa6.08□□□□□ -1.44
VAMP3-201ENST00000054666 RBMY1BA6NDE4 496 aaKnown RBP6.08□□□□□ -1.44
VAMP3-201ENST00000054666 RBMY1EA6NEQ0 496 aaKnown RBP6.08□□□□□ -1.44
VAMP3-201ENST00000054666 M0QY20 66 aa6.08□□□□□ -1.44
VAMP3-201ENST00000054666 CRYGDP07320 174 aa6.08□□□□□ -1.44
VAMP3-201ENST00000054666 NPSP0C0P6 89 aa6.08□□□□□ -1.44
VAMP3-201ENST00000054666 RBMY1DP0C7P1 496 aaKnown RBP6.08□□□□□ -1.44
VAMP3-201ENST00000054666 HIST2H2BDQ6DRA6 164 aa6.08□□□□□ -1.44
VAMP3-201ENST00000054666 ZNF256Q9Y2P7 627 aaPredicted RBP6.08□□□□□ -1.44
VAMP3-201ENST00000054666 A8MWV9 139 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 M0R2P5 195 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 RHOHQ15669 191 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 STHQ8IWL8 128 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 TMEM141Q96I45 108 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 LINC01587Q99440 93 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 CITED2Q99967 270 aaPredicted RBP6.07□□□□□ -1.44
VAMP3-201ENST00000054666 C16orf95Q9H693 158 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 HIGD1BQ9P298 99 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 MXRA5Q9NR99 2828 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 OR11H12B2RN74 326 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 TAX1BP3O14907 124 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 RIPPLY3P57055 190 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 VAMP3Q15836 100 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 PAPPA-AS1Q5QFB9 102 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 Q6ZVH6 145 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 OR11H2Q8NH07 326 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 LINC01006Q8NI28 216 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 TIMM17AQ99595 171 aa6.07□□□□□ -1.44
VAMP3-201ENST00000054666 FLNAP21333 2647 aaKnown RBP6.07□□□□□ -1.44
VAMP3-201ENST00000054666 TRAV8-6A0A0B4J262 113 aa6.06□□□□□ -1.44
VAMP3-201ENST00000054666 PRSS29PA6NIE9 313 aa6.06□□□□□ -1.44
VAMP3-201ENST00000054666 PTTG1IPP53801 180 aa6.06□□□□□ -1.44
VAMP3-201ENST00000054666 NSUN5P1Q3KNT7 163 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms