RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF506Q5JVG8 444 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 VPS13DQ5THJ4 4388 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 ZFP2Q6ZN57 461 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 SCRT2Q9NQ03 307 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 RBFOX3A6NFN3 312 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 CRYBA4P53673 196 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 CENPWQ5EE01 88 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 TEX261Q6UWH6 196 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 SH2D6Q7Z4S9 175 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 OR4C5Q8NGB2 326 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 VSIG2Q96IQ7 327 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 MED9Q9NWA0 146 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 HHLA3Q9XRX5 114 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 BOLA1Q9Y3E2 137 aa12.74□□□□□ -0.37
CLN3-259ENST00000637551 PAX4O43316 350 aa12.73□□□□□ -0.37
CLN3-259ENST00000637551 UBE2DNLQ8IWF7 75 aa12.73□□□□□ -0.37
CLN3-259ENST00000637551 SYT8Q8NBV8 401 aa12.73□□□□□ -0.37
CLN3-259ENST00000637551 DERL1Q9BUN8 251 aa12.73□□□□□ -0.37
CLN3-259ENST00000637551 ICOSQ9Y6W8 199 aa12.73□□□□□ -0.37
CLN3-259ENST00000637551 KMT2AQ03164 3969 aa12.72□□□□□ -0.37
CLN3-259ENST00000637551 TRGV4A0A0C4DH28 118 aa12.72□□□□□ -0.37
CLN3-259ENST00000637551 RS1O15537 224 aa12.72□□□□□ -0.37
CLN3-259ENST00000637551 NUDT3O95989 172 aa12.72□□□□□ -0.37
CLN3-259ENST00000637551 MRPL23Q16540 153 aaKnown RBP12.72□□□□□ -0.37
CLN3-259ENST00000637551 UPK3BQ9BT76 320 aa12.72□□□□□ -0.37
CLN3-259ENST00000637551 KIAA1109Q2LD37 5005 aa12.72□□□□□ -0.37
CLN3-259ENST00000637551 DNAH6Q9C0G6 4158 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 TRBV6-4A0A1B0GX49 114 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 RHODO00212 210 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 IGLV2-8P01709 118 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 MGST1P10620 155 aaKnown RBP12.71□□□□□ -0.37
CLN3-259ENST00000637551 RPS20P60866 119 aaKnown RBP12.71□□□□□ -0.37
CLN3-259ENST00000637551 CFAP126Q5VTH2 177 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 ZNF479Q96JC4 524 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 FAM210AQ96ND0 272 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 SMDT1Q9H4I9 107 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 LY96Q9Y6Y9 160 aa12.71□□□□□ -0.37
CLN3-259ENST00000637551 XKRY2A2RUG3 117 aa12.7□□□□□ -0.38
CLN3-259ENST00000637551 M0R036 132 aa12.7□□□□□ -0.38
CLN3-259ENST00000637551 NXPH4O95158 308 aa12.7□□□□□ -0.38
CLN3-259ENST00000637551 OR5AL1P0C617 328 aa12.7□□□□□ -0.38
CLN3-259ENST00000637551 GATA1P15976 413 aaPredicted RBP12.7□□□□□ -0.38
CLN3-259ENST00000637551 ZNF575Q86XF7 245 aa12.7□□□□□ -0.38
CLN3-259ENST00000637551 ZFP82Q8N141 532 aa12.7□□□□□ -0.38
CLN3-259ENST00000637551 NHLRC2Q8NBF2 726 aa12.7□□□□□ -0.38
CLN3-259ENST00000637551 SSBP4Q9BWG4 385 aaPredicted RBP12.7□□□□□ -0.38
CLN3-259ENST00000637551 TRBV20OR9-2A0A075B6H5 130 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 A0A096LPF7 62 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 C19orf71A6NCJ1 209 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 PGPEP1LA6NFU8 196 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 H3BVH4 76 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 SNAI2O43623 268 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 ARMS2P0C7Q2 107 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 PCNPQ8WW12 178 aaKnown RBP12.69□□□□□ -0.38
CLN3-259ENST00000637551 PHLDA3Q9Y5J5 127 aa12.69□□□□□ -0.38
CLN3-259ENST00000637551 HECTD4Q9Y4D8 3996 aa12.68□□□□□ -0.38
CLN3-259ENST00000637551 A0A0J9YY99 117 aa12.68□□□□□ -0.38
CLN3-259ENST00000637551 BTF3P20290 206 aaKnown RBP12.68□□□□□ -0.38
CLN3-259ENST00000637551 TIRAPP58753 221 aa12.68□□□□□ -0.38
CLN3-259ENST00000637551 RHOHQ15669 191 aa12.68□□□□□ -0.38
CLN3-259ENST00000637551 DAZAP1Q96EP5 407 aaKnown RBP12.68□□□□□ -0.38
CLN3-259ENST00000637551 MRPS16Q9Y3D3 137 aaKnown RBP12.68□□□□□ -0.38
CLN3-259ENST00000637551 IGHV3-53P01767 116 aa12.67□□□□□ -0.38
CLN3-259ENST00000637551 SFTA3P0C7M3 94 aa12.67□□□□□ -0.38
CLN3-259ENST00000637551 NEGR1Q7Z3B1 354 aa12.67□□□□□ -0.38
CLN3-259ENST00000637551 PARLQ9H300 379 aa12.67□□□□□ -0.38
CLN3-259ENST00000637551 TOR2AQ5JU69 321 aa12.66□□□□□ -0.38
CLN3-259ENST00000637551 PRR27Q6MZM9 219 aa12.66□□□□□ -0.38
CLN3-259ENST00000637551 ZNRF2Q8NHG8 242 aa12.66□□□□□ -0.38
CLN3-259ENST00000637551 PRADC1Q9BSG0 188 aa12.66□□□□□ -0.38
CLN3-259ENST00000637551 EIF5A2Q9GZV4 153 aaKnown RBP12.66□□□□□ -0.38
CLN3-259ENST00000637551 LINC00588Q9Y4M8 146 aa12.66□□□□□ -0.38
CLN3-259ENST00000637551 DNAH10Q8IVF4 4471 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 RAB19A4D1S5 217 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 K7EP13 123 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 P01737 135 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 SRIP30626 198 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 UFSP1Q6NVU6 142 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 Q6ZR54 194 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 SFRP2Q96HF1 295 aa12.65□□□□□ -0.38
CLN3-259ENST00000637551 A0A1W2PPQ1 181 aa12.64□□□□□ -0.39
CLN3-259ENST00000637551 F2Z2F3 143 aa12.64□□□□□ -0.39
CLN3-259ENST00000637551 K7EQD1 137 aa12.64□□□□□ -0.39
CLN3-259ENST00000637551 TTC32Q5I0X7 151 aa12.64□□□□□ -0.39
CLN3-259ENST00000637551 DMRTA1Q5VZB9 504 aa12.64□□□□□ -0.39
CLN3-259ENST00000637551 GRIFINA4D1Z8 144 aa12.63□□□□□ -0.39
CLN3-259ENST00000637551 IGLC6P0CF74 106 aa12.63□□□□□ -0.39
CLN3-259ENST00000637551 GYPEP15421 78 aa12.63□□□□□ -0.39
CLN3-259ENST00000637551 ESRGQ1W209 222 aa12.63□□□□□ -0.39
CLN3-259ENST00000637551 FAM74A3Q4VXF1 159 aa12.63□□□□□ -0.39
CLN3-259ENST00000637551 FAM231DQ6ZW35 169 aa12.63□□□□□ -0.39
CLN3-259ENST00000637551 SLC25A29Q8N8R3 303 aa12.63□□□□□ -0.39
CLN3-259ENST00000637551 TMSB15BA0A087X1C1 80 aa12.62□□□□□ -0.39
CLN3-259ENST00000637551 WDR73Q6P4I2 378 aa12.62□□□□□ -0.39
CLN3-259ENST00000637551 OR2D3Q8NGH3 330 aa12.62□□□□□ -0.39
CLN3-259ENST00000637551 CACNG7P62955 275 aa12.61□□□□□ -0.39
CLN3-259ENST00000637551 RPL19P84098 196 aaKnown RBP12.61□□□□□ -0.39
CLN3-259ENST00000637551 CT83Q5H943 113 aa12.61□□□□□ -0.39
CLN3-259ENST00000637551 LINC00336Q6ZUF6 198 aa12.61□□□□□ -0.39
CLN3-259ENST00000637551 SMIM7Q9BQ49 75 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms