RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 MT1GP13640 62 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 EMX2Q04743 252 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 DMAC1Q96GE9 116 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 OR2J1Q9GZK6 312 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 FXYD6Q9H0Q3 95 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 TAF9BQ9HBM6 251 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 ZFYVE9O95405 1425 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 CDK12Q9NYV4 1490 aaPredicted RBP-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 COL4A6Q14031 1691 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 KIDINS220Q9ULH0 1771 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 CASZ1Q86V15 1759 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 A0A0D9SFI3 127 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 K7EP34 96 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 SPINK4O60575 86 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 TRACP01848 142 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 LSM6P62312 80 aaKnown RBP-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 FKBP1CQ5VVH2 108 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 PHF5AQ7RTV0 110 aaKnown RBP-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 SSBP3-AS1Q7Z2R9 100 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 OR10X1Q8NGY0 326 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 LINC00472Q9H8W2 130 aa-1.79□□□□□ -2.7
SCN1A-211ENST00000635893 SSC5DA1L4H1 1573 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 TROQ12816 1431 aaPredicted RBP-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 CASKIN1Q8WXD9 1431 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 CDC42EP2O14613 210 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 IFNA14P01570 189 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 SPRR1BP22528 89 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 CAPZBP47756 277 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 ELOF1P60002 83 aaKnown RBP-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 NCALDP61601 193 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 MRPS36P82909 103 aaKnown RBP-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 MT1MQ8N339 61 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 ATG5Q9H1Y0 275 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 FAM32AQ9Y421 112 aaKnown RBP-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 ZFHX4Q86UP3 3567 aa-1.8□□□□□ -2.7
SCN1A-211ENST00000635893 RTL9Q8NET4 1388 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 M0QX08 132 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 PYYP10082 97 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 BCL2P10415 239 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 NDUFA6P56556 154 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 TPM4P67936 248 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 SMIM11BQ8TCY0 68 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 CLEC2BQ92478 149 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 TMEM141Q96I45 108 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 NMNAT1Q9HAN9 279 aaPredicted RBP-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 COA4Q9NYJ1 87 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 DLEC1Q9Y238 1755 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 KNDC1Q76NI1 1749 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 NINQ8N4C6 2090 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 ADGRB1O14514 1584 aa-1.81□□□□□ -2.7
SCN1A-211ENST00000635893 UBR2Q8IWV8 1755 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 FXYD6-FXYD2A0A087WZ82 144 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 TRGV1A0A0A0MS02 117 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 RPP14O95059 124 aaKnown RBP-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 SERPINA1P01009 418 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 MT2AP02795 61 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 CYBAP13498 195 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 RPL35P42766 123 aaKnown RBP-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 HAMPP81172 84 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 KRTAP19-5Q3LI72 72 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 C1orf140Q5VVS0 124 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 OR8J3Q8NGG0 315 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 VIRMAQ69YN4 1812 aaKnown RBP-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 NCAPD3P42695 1498 aa-1.82□□□□□ -2.7
SCN1A-211ENST00000635893 KIAA1107Q9UPP5 1409 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 TMEM114B3SHH9 223 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 C5orf58C9J3I9 102 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 APODP05090 189 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 OGNP20774 298 aaKnown RBP-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 DNAJB13P59910 316 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 RHOHQ15669 191 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 OR5A2Q8NGI9 324 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 BTF3L4Q96K17 158 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 RANBP2P49792 3224 aaKnown RBP-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 PRUNE2Q8WUY3 3088 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 MYO15AQ9UKN7 3530 aa-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 SPTAN1Q13813 2472 aaKnown RBP-1.83□□□□□ -2.7
SCN1A-211ENST00000635893 IFITM5A6NNB3 132 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 SPINK8P0C7L1 97 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 GLRXP35754 106 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 UBE2DNLQ8IWF7 75 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 OR4B1Q8NGF8 309 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 OR8J2Q8NGG1 315 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 OR2H1Q9GZK4 316 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 USP54Q70EL1 1684 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 CD109Q6YHK3 1445 aa-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 XIRP1Q702N8 1843 aaKnown RBP-1.84□□□□□ -2.7
SCN1A-211ENST00000635893 TMEM189A5PLL7 270 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 CETN3O15182 167 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 NDUFC2O95298 119 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 HSPE1P61604 102 aaKnown RBP-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 LIN52Q52LA3 116 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 DIRC1Q969H9 104 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 PAIP2Q9BPZ3 127 aaKnown RBP-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 C19orf12Q9NSK7 152 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 FKBP11Q9NYL4 201 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 BET1LQ9NYM9 111 aa-1.85□□□□□ -2.71
SCN1A-211ENST00000635893 SPTBN5Q9NRC6 3674 aaKnown RBP-1.86□□□□□ -2.71
SCN1A-211ENST00000635893 TRAV17A0A0B4J275 112 aa-1.86□□□□□ -2.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms