RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LENEPQ9Y5L5 61 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 PROP1O75360 226 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 IGHV4-59P01825 116 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 ELANEP08246 267 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 ANKRD39Q53RE8 183 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 ZNF493Q6ZR52 646 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 GTSF1Q8WW33 167 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 IGF2BP2-AS1Q96M15 143 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 F8W1H4 67 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 NBL1P41271 181 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 IGLV1-47P01700 117 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 PLA2G5P39877 138 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 PPDPFLQ8WWR9 84 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 ATP6V0BQ99437 205 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 ABCA12Q86UK0 2595 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 CCL25O15444 150 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 BLCAPP62952 87 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 KLF12Q9Y4X4 402 aa10.94□□□□□ -0.66
CPSF1-212ENST00000616140 C2orf16Q68DN1 1984 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 INS-IGF2F8WCM5 200 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 ODF3L1Q8IXM7 274 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 DEFB125Q8N687 156 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 SIVA1O15304 175 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 BUB3O43684 328 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 TAL2Q16559 108 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 ZNF48Q96MX3 618 aaPredicted RBP10.93□□□□□ -0.66
CPSF1-212ENST00000616140 TMEM243Q9BU79 118 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 IGHV4-61A0A0C4DH41 118 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 DEFB112Q30KQ8 113 aa10.93□□□□□ -0.66
CPSF1-212ENST00000616140 GAGE6Q13070 117 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 C12orf74Q32Q52 190 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 H3BMM0 161 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 UBE2WQ96B02 151 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 MRPL53Q96EL3 112 aaKnown RBP10.92□□□□□ -0.66
CPSF1-212ENST00000616140 NCKAP5O14513 1909 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 DNAJC30Q96LL9 226 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 OVOL2Q9BRP0 275 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 FASNP49327 2511 aaKnown RBP10.92□□□□□ -0.66
CPSF1-212ENST00000616140 RBAKDNA6NC62 111 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 NXPH4O95158 308 aa10.92□□□□□ -0.66
CPSF1-212ENST00000616140 F5H768 121 aa10.91□□□□□ -0.66
CPSF1-212ENST00000616140 NPBQ8NG41 125 aa10.91□□□□□ -0.66
CPSF1-212ENST00000616140 ANKRD11Q6UB99 2663 aaPredicted RBP10.91□□□□□ -0.66
CPSF1-212ENST00000616140 H3BUA1 57 aa10.91□□□□□ -0.66
CPSF1-212ENST00000616140 HOXD3P31249 432 aaPredicted RBP10.91□□□□□ -0.66
CPSF1-212ENST00000616140 Q8N9W7 124 aa10.91□□□□□ -0.66
CPSF1-212ENST00000616140 RPL39LQ96EH5 51 aaKnown RBP10.91□□□□□ -0.66
CPSF1-212ENST00000616140 TEX22C9J3V5 150 aa10.9□□□□□ -0.66
CPSF1-212ENST00000616140 J3QLI3 93 aa10.9□□□□□ -0.66
CPSF1-212ENST00000616140 LINC01545Q5VT33 79 aa10.9□□□□□ -0.66
CPSF1-212ENST00000616140 CRIP3Q6Q6R5 217 aa10.9□□□□□ -0.66
CPSF1-212ENST00000616140 DEFB136Q30KP8 78 aa10.9□□□□□ -0.66
CPSF1-212ENST00000616140 PRAC2D3DTV9 90 aa10.9□□□□□ -0.66
CPSF1-212ENST00000616140 TTTY13Q9BZ97 58 aa10.9□□□□□ -0.66
CPSF1-212ENST00000616140 IGLV2-23P01705 113 aa10.9□□□□□ -0.67
CPSF1-212ENST00000616140 P0C879 139 aa10.9□□□□□ -0.67
CPSF1-212ENST00000616140 BRWD1-AS2P59051 145 aa10.9□□□□□ -0.67
CPSF1-212ENST00000616140 AJUBAQ96IF1 538 aa10.9□□□□□ -0.67
CPSF1-212ENST00000616140 IGHV4-38-2P0DP08 117 aa10.89□□□□□ -0.67
CPSF1-212ENST00000616140 DAD1P61803 113 aa10.89□□□□□ -0.67
CPSF1-212ENST00000616140 DEFB121Q5J5C9 76 aa10.89□□□□□ -0.67
CPSF1-212ENST00000616140 INAFM2P0DMQ5 153 aa10.88□□□□□ -0.67
CPSF1-212ENST00000616140 FOXI2Q6ZQN5 318 aa10.88□□□□□ -0.67
CPSF1-212ENST00000616140 SRSF2Q01130 221 aaKnown RBP10.88□□□□□ -0.67
CPSF1-212ENST00000616140 VPREB3Q9UKI3 123 aa10.88□□□□□ -0.67
CPSF1-212ENST00000616140 DENND4AQ7Z401 1863 aa10.88□□□□□ -0.67
CPSF1-212ENST00000616140 K7EMI3 77 aa10.88□□□□□ -0.67
CPSF1-212ENST00000616140 IGF2-ASQ6U949 168 aa10.88□□□□□ -0.67
CPSF1-212ENST00000616140 EDA2RQ9HAV5 297 aa10.88□□□□□ -0.67
CPSF1-212ENST00000616140 GAGE12HA6NDE8 117 aa10.87□□□□□ -0.67
CPSF1-212ENST00000616140 UTF1Q5T230 341 aa10.87□□□□□ -0.67
CPSF1-212ENST00000616140 ZNF295-AS1Q8N0V1 137 aa10.87□□□□□ -0.67
CPSF1-212ENST00000616140 PKD1L2Q7Z442 2459 aa10.87□□□□□ -0.67
CPSF1-212ENST00000616140 TANC2Q9HCD6 1990 aa10.87□□□□□ -0.67
CPSF1-212ENST00000616140 IGHV4-30-2A0A087WSY4 118 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 Q8N7P7 452 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 ZNF503Q96F45 646 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 A0A096LPF7 62 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 RHOHQ15669 191 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 U3KQE9 123 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 OBSL1O75147 1896 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.86□□□□□ -0.67
CPSF1-212ENST00000616140 IGKV2-29A2NJV5 120 aaPredicted RBP10.86□□□□□ -0.67
CPSF1-212ENST00000616140 CGB3P0DN86 165 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 CGB7P0DN87 165 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 CRYGCP07315 174 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 HERVK_113P63121 156 aa10.86□□□□□ -0.67
CPSF1-212ENST00000616140 ADAMTS9Q9P2N4 1935 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 DEFB1P60022 68 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 NTN5Q8WTR8 489 aaPredicted RBP10.85□□□□□ -0.67
CPSF1-212ENST00000616140 ALPK3Q96L96 1907 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 SOCS3O14543 225 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 SVIPQ8NHG7 77 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 FN1P02751 2386 aaKnown RBP10.85□□□□□ -0.67
CPSF1-212ENST00000616140 CFC1BP0CG36 223 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 CFC1P0CG37 223 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 CARD19Q96LW7 228 aa10.85□□□□□ -0.67
CPSF1-212ENST00000616140 A0A0J9YXV3 536 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 ZNF561-AS1K7EIQ3 104 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 WI2-2373I1.2A0A1W2PRP0 233 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms