RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 GTSF1LQ9H1H1 148 aa10.69□□□□□ -0.7
GGA3-220ENST00000613421 TRBV25-1A0A075B6N4 114 aa10.69□□□□□ -0.7
GGA3-220ENST00000613421 TRBV6-1A0A0K0K1D8 114 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 LINC01545Q5VT33 79 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 TRAV8-3A0A0A6YYJ7 113 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 A0A1W2PPM0 123 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 PRSS29PA6NIE9 313 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 OTOGLQ3ZCN5 2332 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 ZNF48Q96MX3 618 aaPredicted RBP10.68□□□□□ -0.7
GGA3-220ENST00000613421 SIRPDQ9H106 197 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 FANCD2OSQ96PS1 177 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 JPT2Q9H910 190 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 SPG11Q96JI7 2443 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 GOLGB1Q14789 3259 aaKnown RBP10.68□□□□□ -0.7
GGA3-220ENST00000613421 PCP2Q8IVA1 136 aa10.68□□□□□ -0.7
GGA3-220ENST00000613421 GAGE7O76087 117 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 GAGE12FP0CL80 117 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 GAGE12GP0CL81 117 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 GAGE12IP0CL82 117 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 GAGE2BQ13066 116 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 DAZAP2Q15038 168 aaPredicted RBP10.67□□□□□ -0.7
GGA3-220ENST00000613421 GAGE2EQ4V326 116 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 GAGE2DQ9UEU5 116 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 TRBV20-1A0A075B6N2 111 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 C19orf71A6NCJ1 209 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 J3QQQ9 107 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 NDUFA12Q9UI09 145 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 K7ERJ3 54 aa10.67□□□□□ -0.7
GGA3-220ENST00000613421 CHD3Q12873 2000 aaKnown RBP10.66□□□□□ -0.7
GGA3-220ENST00000613421 RHOHQ15669 191 aa10.66□□□□□ -0.7
GGA3-220ENST00000613421 TNCP24821 2201 aa10.66□□□□□ -0.7
GGA3-220ENST00000613421 K7EP13 123 aa10.66□□□□□ -0.7
GGA3-220ENST00000613421 RPL39LQ96EH5 51 aaKnown RBP10.66□□□□□ -0.7
GGA3-220ENST00000613421 TMEM243Q9BU79 118 aa10.66□□□□□ -0.7
GGA3-220ENST00000613421 ZFAND6Q6FIF0 208 aa10.66□□□□□ -0.7
GGA3-220ENST00000613421 OVOL2Q9BRP0 275 aa10.66□□□□□ -0.7
GGA3-220ENST00000613421 ACACBO00763 2458 aa10.66□□□□□ -0.7
GGA3-220ENST00000613421 IGLV2-8P01709 118 aa10.65□□□□□ -0.7
GGA3-220ENST00000613421 DEFB136Q30KP8 78 aa10.65□□□□□ -0.7
GGA3-220ENST00000613421 C9orf47Q6ZRZ4 202 aa10.65□□□□□ -0.7
GGA3-220ENST00000613421 TNRC6AQ8NDV7 1962 aaKnown RBP10.65□□□□□ -0.7
GGA3-220ENST00000613421 CTRLP40313 264 aa10.65□□□□□ -0.7
GGA3-220ENST00000613421 DEFB125Q8N687 156 aa10.65□□□□□ -0.71
GGA3-220ENST00000613421 ANKRD39Q53RE8 183 aa10.64□□□□□ -0.71
GGA3-220ENST00000613421 Q6ZVH6 145 aa10.64□□□□□ -0.71
GGA3-220ENST00000613421 F8W1H4 67 aa10.64□□□□□ -0.71
GGA3-220ENST00000613421 PTPRQQ9UMZ3 2332 aa10.64□□□□□ -0.71
GGA3-220ENST00000613421 VWC2LB2RUY7 222 aa10.64□□□□□ -0.71
GGA3-220ENST00000613421 SCRT2Q9NQ03 307 aa10.64□□□□□ -0.71
GGA3-220ENST00000613421 PRO1854Q9UHT4 67 aa10.64□□□□□ -0.71
GGA3-220ENST00000613421 ODF3BA8MYP8 253 aa10.63□□□□□ -0.71
GGA3-220ENST00000613421 ETDBQ3ZM63 59 aa10.63□□□□□ -0.71
GGA3-220ENST00000613421 SUMO4Q6EEV6 95 aa10.63□□□□□ -0.71
GGA3-220ENST00000613421 SLURP1P55000 103 aa10.63□□□□□ -0.71
GGA3-220ENST00000613421 C12orf74Q32Q52 190 aa10.63□□□□□ -0.71
GGA3-220ENST00000613421 RNASE13Q5GAN3 156 aaKnown RBP10.63□□□□□ -0.71
GGA3-220ENST00000613421 GAGE6Q13070 117 aa10.62□□□□□ -0.71
GGA3-220ENST00000613421 DEFB113Q30KQ7 82 aa10.62□□□□□ -0.71
GGA3-220ENST00000613421 A0A1B0GXF2 115 aa10.62□□□□□ -0.71
GGA3-220ENST00000613421 IGHG2P01859 326 aa10.62□□□□□ -0.71
GGA3-220ENST00000613421 FGF6P10767 208 aa10.62□□□□□ -0.71
GGA3-220ENST00000613421 DAD1P61803 113 aa10.61□□□□□ -0.71
GGA3-220ENST00000613421 HERVK_113P63121 156 aa10.61□□□□□ -0.71
GGA3-220ENST00000613421 U3KQE9 123 aa10.61□□□□□ -0.71
GGA3-220ENST00000613421 CUL9Q8IWT3 2517 aa10.61□□□□□ -0.71
GGA3-220ENST00000613421 SPINK8P0C7L1 97 aa10.61□□□□□ -0.71
GGA3-220ENST00000613421 K7EMT4 169 aa10.61□□□□□ -0.71
GGA3-220ENST00000613421 LINC00322Q6ZN03 302 aaPredicted RBP10.61□□□□□ -0.71
GGA3-220ENST00000613421 YPEL4Q96NS1 127 aa10.61□□□□□ -0.71
GGA3-220ENST00000613421 NRGNQ92686 78 aa10.6□□□□□ -0.71
GGA3-220ENST00000613421 H3BMG7 143 aa10.6□□□□□ -0.71
GGA3-220ENST00000613421 J3QKU1 62 aa10.6□□□□□ -0.71
GGA3-220ENST00000613421 BOD1L2Q8IYS8 172 aa10.6□□□□□ -0.71
GGA3-220ENST00000613421 TSSC4Q9Y5U2 329 aaPredicted RBP10.6□□□□□ -0.71
GGA3-220ENST00000613421 F5H768 121 aa10.6□□□□□ -0.71
GGA3-220ENST00000613421 CCL24O00175 119 aa10.6□□□□□ -0.71
GGA3-220ENST00000613421 PPDPFLQ8WWR9 84 aa10.6□□□□□ -0.71
GGA3-220ENST00000613421 H3BMM0 161 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 UBE2WQ96B02 151 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 SPAG8Q99932 426 aaPredicted RBP10.59□□□□□ -0.71
GGA3-220ENST00000613421 FSTL3O95633 263 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 ZFP2Q6ZN57 461 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 APRG1Q8IVJ8 170 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 PFN2P35080 140 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 CCL25O15444 150 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 CRYGBP07316 175 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 AMTNQ6UX39 209 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 MLST8Q9BVC4 326 aa10.59□□□□□ -0.71
GGA3-220ENST00000613421 IGHV4OR15-8A0A075B7B6 117 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 A0A087WW49 117 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 GPHB5Q86YW7 130 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.58□□□□□ -0.72
GGA3-220ENST00000613421 IGKV2-29A2NJV5 120 aaPredicted RBP10.58□□□□□ -0.72
GGA3-220ENST00000613421 LMO4P61968 165 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 UNQ9165/PRO28630Q6UXU0 137 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 LAMTOR3Q9UHA4 124 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 PRB1P04280 392 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 CCDC140Q96MF4 163 aa10.58□□□□□ -0.72
GGA3-220ENST00000613421 NOP10Q9NPE3 64 aaKnown RBP10.58□□□□□ -0.72
GGA3-220ENST00000613421 MED14OSP0DP75 135 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms