RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 GGTLC3B5MD39 225 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 CIDEAO60543 219 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 ATP6V0CP27449 155 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 FLI1Q01543 452 aaPredicted RBP10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 OR2G3Q8NGZ4 309 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 ATP6V0E2Q8NHE4 81 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 NTN5Q8WTR8 489 aaPredicted RBP10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 GTSF1LQ9H1H1 148 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 SH3BGRL3Q9H299 93 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 MYCBP2O75592 4640 aa10.48□□□□□ -0.73
SHKBP1-228ENST00000602239 WFDC2Q14508 124 aa10.47□□□□□ -0.73
SHKBP1-228ENST00000602239 SMUG1Q53HV7 270 aa10.47□□□□□ -0.73
SHKBP1-228ENST00000602239 Q5BKY6 102 aa10.47□□□□□ -0.73
SHKBP1-228ENST00000602239 PTH2Q96A98 100 aa10.47□□□□□ -0.73
SHKBP1-228ENST00000602239 TMEM70Q9BUB7 260 aa10.47□□□□□ -0.73
SHKBP1-228ENST00000602239 ALG5Q9Y673 324 aa10.47□□□□□ -0.73
SHKBP1-228ENST00000602239 TRAV34A0A0B4J273 112 aa10.46□□□□□ -0.73
SHKBP1-228ENST00000602239 IGKV3D-20A0A0C4DH25 116 aa10.46□□□□□ -0.73
SHKBP1-228ENST00000602239 FAM229AH3BQW9 127 aa10.46□□□□□ -0.73
SHKBP1-228ENST00000602239 K7EQM0 130 aa10.46□□□□□ -0.73
SHKBP1-228ENST00000602239 MGST1P10620 155 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-228ENST00000602239 PSMG3Q9BT73 122 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-228ENST00000602239 JPT2Q9H910 190 aa10.46□□□□□ -0.73
SHKBP1-228ENST00000602239 VPS13BQ7Z7G8 4022 aa10.46□□□□□ -0.74
SHKBP1-228ENST00000602239 CYB561D1Q8N8Q1 229 aa10.45□□□□□ -0.74
SHKBP1-228ENST00000602239 AQP10Q96PS8 301 aa10.45□□□□□ -0.74
SHKBP1-228ENST00000602239 PARLQ9H300 379 aa10.45□□□□□ -0.74
SHKBP1-228ENST00000602239 GAGE12JA6NER3 117 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 CXorf1O96002 111 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 SERF2P84101 59 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 GAGE1Q13065 139 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 GAGE4Q13068 117 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 GAGE5Q13069 117 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 ZFP69Q49AA0 526 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 GAGE13Q4V321 117 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 OR2T35Q8NGX2 323 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 SAMD10Q9BYL1 202 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 ACTR3CQ9C0K3 210 aaPredicted RBP10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 TMEM167BQ9NRX6 74 aa10.44□□□□□ -0.74
SHKBP1-228ENST00000602239 LECT2O14960 151 aa10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 MBP02144 154 aa10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 LGALSLQ3ZCW2 172 aaPredicted RBP10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 SAPCD1Q5SSQ6 148 aa10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 DAZ4Q86SG3 579 aaKnown RBP10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 DAZ3Q9NR90 486 aaKnown RBP10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 TNFSF18Q9UNG2 199 aa10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 BOLA1Q9Y3E2 137 aa10.43□□□□□ -0.74
SHKBP1-228ENST00000602239 LINC00694P0DN24 101 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 S100A4P26447 101 aaKnown RBP10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 CRIP1P50238 77 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 LAGE3Q14657 143 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 ZNF726P1Q15940 193 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 DMRTA1Q5VZB9 504 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 UFSP1Q6NVU6 142 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 ZFP2Q6ZN57 461 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 C14orf178Q8N769 122 aaPredicted RBP10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 ARL2-SNX15V9GYD0 113 aa10.42□□□□□ -0.74
SHKBP1-228ENST00000602239 A0A1W2PRE2 83 aa10.41□□□□□ -0.74
SHKBP1-228ENST00000602239 FABP5P3A8MUU1 101 aa10.41□□□□□ -0.74
SHKBP1-228ENST00000602239 A8MWV9 139 aa10.41□□□□□ -0.74
SHKBP1-228ENST00000602239 RPL7L1Q6DKI1 246 aaKnown RBP10.41□□□□□ -0.74
SHKBP1-228ENST00000602239 TM2D2Q9BX73 214 aa10.41□□□□□ -0.74
SHKBP1-228ENST00000602239 MED28Q9H204 178 aa10.41□□□□□ -0.74
SHKBP1-228ENST00000602239 IFNA7P01567 189 aa10.4□□□□□ -0.74
SHKBP1-228ENST00000602239 ASIPP42127 132 aa10.4□□□□□ -0.74
SHKBP1-228ENST00000602239 UBE2G2P60604 165 aa10.4□□□□□ -0.74
SHKBP1-228ENST00000602239 PIK3CD-AS1Q5SR53 167 aa10.4□□□□□ -0.74
SHKBP1-228ENST00000602239 DNAJC30Q96LL9 226 aa10.4□□□□□ -0.74
SHKBP1-228ENST00000602239 RNF222A6NCQ9 220 aa10.39□□□□□ -0.75
SHKBP1-228ENST00000602239 B4DEV8 164 aa10.39□□□□□ -0.75
SHKBP1-228ENST00000602239 H3BVH4 76 aa10.39□□□□□ -0.75
SHKBP1-228ENST00000602239 IL36BQ9NZH7 164 aa10.39□□□□□ -0.75
SHKBP1-228ENST00000602239 DNAH8Q96JB1 4490 aa10.39□□□□□ -0.75
SHKBP1-228ENST00000602239 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 TRAV8-3A0A0A6YYJ7 113 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 GRIFINA4D1Z8 144 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 KRBOX1C9JBD0 128 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 M0R036 132 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 PEX7O00628 323 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 C1QBP02746 253 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 FGF8P55075 233 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 LINC01620Q4KN68 170 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 Q6ZSA8 131 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 BAALCQ8WXS3 180 aa10.38□□□□□ -0.75
SHKBP1-228ENST00000602239 FAM74A7A6NL05 159 aa10.37□□□□□ -0.75
SHKBP1-228ENST00000602239 ARMS2P0C7Q2 107 aa10.37□□□□□ -0.75
SHKBP1-228ENST00000602239 Q86TA4 180 aa10.37□□□□□ -0.75
SHKBP1-228ENST00000602239 ZC2HC1AQ96GY0 325 aa10.37□□□□□ -0.75
SHKBP1-228ENST00000602239 A0A087WWL8 130 aa10.36□□□□□ -0.75
SHKBP1-228ENST00000602239 CTXND1A0A1B0GTU2 59 aa10.36□□□□□ -0.75
SHKBP1-228ENST00000602239 DNLZQ5SXM8 178 aa10.36□□□□□ -0.75
SHKBP1-228ENST00000602239 INO80EQ8NBZ0 244 aaPredicted RBP10.36□□□□□ -0.75
SHKBP1-228ENST00000602239 A0A087WWC5 75 aa10.35□□□□□ -0.75
SHKBP1-228ENST00000602239 FXYD6-FXYD2A0A087WZ82 144 aa10.35□□□□□ -0.75
SHKBP1-228ENST00000602239 SH2D1AO60880 128 aa10.35□□□□□ -0.75
SHKBP1-228ENST00000602239 GIPP09681 153 aaPredicted RBP10.35□□□□□ -0.75
SHKBP1-228ENST00000602239 FAM74A4Q5TZK3 123 aa10.35□□□□□ -0.75
SHKBP1-228ENST00000602239 NIT1Q86X76 327 aa10.35□□□□□ -0.75
SHKBP1-228ENST00000602239 TMSB15BA0A087X1C1 80 aa10.34□□□□□ -0.75
SHKBP1-228ENST00000602239 BORCS7-ASMTA0A0B4J1R7 106 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms